Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02160 ATGGGATCTGGCAATGAGGTTCACTCTGTTGGTGAGTTCAATTTAGATGCCAAGTGGATTGTAGATCCCAGACAACTATTTGTTGGGCCAAAAATTGGGGAAGGTGCTCATGCCAAAGTCTATGAAGGAAAATATAAAAATCAGAATGTTGCTGTTAAGATTATCAACAAGGGTGAAACCCCAGAAGAGATTTCAAGGAGAGATGCTCGGTTTGGCAGAGAGGTTGCTATGTTGTCAAGAGTTCAACACAAAAATTTGGTTAAGTTTATTGGGGCCTGCAAAGAACCTGTTATGGTTATAGTAACTGAACTTCTATTAGGGGGAACATTACGCAAATATCTCTTGAATATGCGACCAAAGTGCTTGGATATGTGTGTGGCCGTTGGATTTGCTCTGGATATTGCCCGAGCAATGGAATGCTTACACTCCCATGGGATCATTCACCGTGACCTTAAACCTGATAACTTGATCTTGACAGCAGATCACAAGACAGTTAAACTTGCTGATTTTGGTTTAGCCAGAGAAGAGTCCTTAACGGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCAGAACTTTACAGCACTGTTACTCTAAGACAAGGTGAAAAGAAGCATTACAACCATAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAGCTCATCCATAATAAGTTGCCCTTTGAAGGGATGTCTAATCTACAGGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCTAGTGCTGAGGACCTTCCAGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAAGAGGATCCAAATGATCGACCCAATTTTTCTCTAATCATACAGATGCTCCTTAGATATCTCTCCACTATTTCACCACAAGAGCCAGTTGTTCCTCTGCGGATGACTTCATCTGAGAATGCTGTATTGCCTCCAGAATCTCCTGGTACAAGTGCATTAATGTTTGGAAGAGATGACTCTGGAGAAACCCCAAAAGCCAATATGGAAGACAGGTCTAAAGGCTTTTTCTTCTGCTTTAACCAGTGTTACTGA 1059 0.4202 MGSGNEVHSVGEFNLDAKWIVDPRQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEEISRRDARFGREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDMCVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPNDRPNFSLIIQMLLRYLSTISPQEPVVPLRMTSSENAVLPPESPGTSALMFGRDDSGETPKANMEDRSKGFFFCFNQCY* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02160 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g02160 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Rops5g02160 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Rops5g02160 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Rops5g02160 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Rops5g02160 352 FunFam Kinase suppressor of Ras 1 15 105 - -
Rops5g02160 352 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Rops5g02160 352 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 22 287 - -
Rops5g02160 352 Gene3D Transferase(Phosphotransferase) domain 1 107 308 - -
Rops5g02160 352 SUPERFAMILY Protein kinase-like (PK-like) 18 312 IPR011009 -
Rops5g02160 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Rops5g02160 352 PIRSF TyrPK_CSF1-R 110 320 - -
Rops5g02160 352 PIRSF TyrPK_CSF1-R 12 129 - -
Rops5g02160 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Rops5g02160 352 CDD STKc_MAP3K-like 32 286 - -
Rops5g02160 352 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g02160 352 FunFam serine/threonine-protein kinase HT1 107 307 - -
Rops5g02160 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02160 Rops-Chr5 46846120 46849611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02160 9 352 MAP Kinase Kinase Kinase AT5G50180 78.779 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Rops5g02160 PK_Tyr_Ser-Thr 2.7e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02160 - - gmx:100792887 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00045 8 936136 939625 Rops5g02160 5 46846120 46849611 PCT