LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops5g02157	ATGATCATCAACCGTCCCAACCTCCCCAAAACTCGCCCTCGACCTGTTCGACCTAATGCCTTACCTTCTGACCCCTTTGCCCAACCTGAAGAAGAACAACCCACTTCCCATTCCGAATCATTGGATACATGGGTACATGGAAAATTGGCTTCTGAGGCAGAAACAACCCAACCCACTTCATCAAAATTGGAACTTGACAAGGCCAAGAGGAAGTACTACAACAAACGGAGGAAGAGAATGTATGGGTCGGATTCCGATGAAGACAACCTACGACACGAGGAGAAGTTTGTGGAGCTGAAACCTGAGGTTGTGGACCTTCCTACATTGCATAGGAGAGAGGAGGAGTTGTATTTTTATGACACTTTTGCTTATCCATGGGAGAAGGAGAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCCGATCAATGCTTAGATAAAGCTTTTCTTCAACCGGGACAATCAAATTCAAATGCAAAGGTTAAGAAGAAAGTGGGTGGAGTTAAAAGGGAGGAGAATAAAGATGAGGTTGGTGTTGAGGATAATAACAAGTTGGTGTTTTTTGAGGAGAAAAAGCAAGAAGAAAAGGAAAAGGGTAAGGATGGTGCATGTAAAGATCTTACGGAGAAGAAGGTTGAAGAGTTCTTTAAGGGTTTGAAGAAAGATCCTAGTAAGGATGTTCAAGTTGGAGAGCCATATCTCTCTTCAAGGAGTACTGGTCTCCCTCCCATATGGGATGGTCCACATGGAACTGTGCTTTTGATTAACAAACCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGCCATGCTGGAACTCTTGACCCAATGGCTACCGGTTTATTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTAGAGAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCAACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAGGGCTTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTACGAGAAAGCAAGGAGGGGAGAAAGCATTGAACTTTCACCCAGACGAATTTCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTAACGTGTTCTAAAGGGACATATATTCGGTCACTCTGCGCAGATTTTGGGAAGGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATAGGGCAATATTCAGCAGATGATGCATGGGACTTTCAAGAGCTGGAAGATGCTATTACCAAAAGTTATCTCTAA	1419	0.4334	MIINRPNLPKTRPRPVRPNALPSDPFAQPEEEQPTSHSESLDTWVHGKLASEAETTQPTSSKLELDKAKRKYYNKRRKRMYGSDSDEDNLRHEEKFVELKPEVVDLPTLHRREEELYFYDTFAYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLQPGQSNSNAKVKKKVGGVKREENKDEVGVEDNNKLVFFEEKKQEEKEKGKDGACKDLTEKKVEEFFKGLKKDPSKDVQVGEPYLSSRSTGLPPIWDGPHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVERYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKRALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWDFQELEDAITKSYL*	473

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops5g02157	472	MobiDBLite	consensus disorder prediction	1	69	-	-
	Rops5g02157	472	Pfam	TruB family pseudouridylate synthase (N terminal domain)	274	424	IPR002501	GO:0006396
	Rops5g02157	472	NCBIfam	tRNA pseudouridine(55) synthase TruB	254	463	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Rops5g02157	472	PANTHER	TRNA-PSEUDOURIDINE SYNTHASE	141	470	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Rops5g02157	472	SUPERFAMILY	Pseudouridine synthase	254	467	IPR020103	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Rops5g02157	472	CDD	PseudoU_synth_EcTruB	255	466	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Rops5g02157	472	Gene3D	Pseudouridine synthase	250	471	-	-
	Rops5g02157	472	FunFam	tRNA pseudouridine synthase B	249	471	-	-
	Rops5g02157	472	Hamap	tRNA pseudouridine synthase B [truB].	252	472	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Rops5g02157	472	Pfam	tRNA pseudouridylate synthase B C-terminal domain	425	468	IPR032819	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops5g02157	Rops-Chr5	46830062	46836151	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops5g02157	255	446	NAC Transcription Factor Family	AT3G57150	34.715	1.28e-20	92.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops5g02157	K03177		-	zju:107415230	678.707

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