Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02157 ATGATCATCAACCGTCCCAACCTCCCCAAAACTCGCCCTCGACCTGTTCGACCTAATGCCTTACCTTCTGACCCCTTTGCCCAACCTGAAGAAGAACAACCCACTTCCCATTCCGAATCATTGGATACATGGGTACATGGAAAATTGGCTTCTGAGGCAGAAACAACCCAACCCACTTCATCAAAATTGGAACTTGACAAGGCCAAGAGGAAGTACTACAACAAACGGAGGAAGAGAATGTATGGGTCGGATTCCGATGAAGACAACCTACGACACGAGGAGAAGTTTGTGGAGCTGAAACCTGAGGTTGTGGACCTTCCTACATTGCATAGGAGAGAGGAGGAGTTGTATTTTTATGACACTTTTGCTTATCCATGGGAGAAGGAGAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCCGATCAATGCTTAGATAAAGCTTTTCTTCAACCGGGACAATCAAATTCAAATGCAAAGGTTAAGAAGAAAGTGGGTGGAGTTAAAAGGGAGGAGAATAAAGATGAGGTTGGTGTTGAGGATAATAACAAGTTGGTGTTTTTTGAGGAGAAAAAGCAAGAAGAAAAGGAAAAGGGTAAGGATGGTGCATGTAAAGATCTTACGGAGAAGAAGGTTGAAGAGTTCTTTAAGGGTTTGAAGAAAGATCCTAGTAAGGATGTTCAAGTTGGAGAGCCATATCTCTCTTCAAGGAGTACTGGTCTCCCTCCCATATGGGATGGTCCACATGGAACTGTGCTTTTGATTAACAAACCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGCCATGCTGGAACTCTTGACCCAATGGCTACCGGTTTATTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTAGAGAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCAACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAGGGCTTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTACGAGAAAGCAAGGAGGGGAGAAAGCATTGAACTTTCACCCAGACGAATTTCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTAACGTGTTCTAAAGGGACATATATTCGGTCACTCTGCGCAGATTTTGGGAAGGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATAGGGCAATATTCAGCAGATGATGCATGGGACTTTCAAGAGCTGGAAGATGCTATTACCAAAAGTTATCTCTAA 1419 0.4334 MIINRPNLPKTRPRPVRPNALPSDPFAQPEEEQPTSHSESLDTWVHGKLASEAETTQPTSSKLELDKAKRKYYNKRRKRMYGSDSDEDNLRHEEKFVELKPEVVDLPTLHRREEELYFYDTFAYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLQPGQSNSNAKVKKKVGGVKREENKDEVGVEDNNKLVFFEEKKQEEKEKGKDGACKDLTEKKVEEFFKGLKKDPSKDVQVGEPYLSSRSTGLPPIWDGPHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVERYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKRALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWDFQELEDAITKSYL* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02157 472 MobiDBLite consensus disorder prediction 1 69 - -
Rops5g02157 472 Pfam TruB family pseudouridylate synthase (N terminal domain) 274 424 IPR002501 GO:0006396
Rops5g02157 472 NCBIfam tRNA pseudouridine(55) synthase TruB 254 463 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Rops5g02157 472 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 141 470 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Rops5g02157 472 SUPERFAMILY Pseudouridine synthase 254 467 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Rops5g02157 472 CDD PseudoU_synth_EcTruB 255 466 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Rops5g02157 472 Gene3D Pseudouridine synthase 250 471 - -
Rops5g02157 472 FunFam tRNA pseudouridine synthase B 249 471 - -
Rops5g02157 472 Hamap tRNA pseudouridine synthase B [truB]. 252 472 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Rops5g02157 472 Pfam tRNA pseudouridylate synthase B C-terminal domain 425 468 IPR032819 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02157 Rops-Chr5 46830062 46836151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02157 255 446 NAC Transcription Factor Family AT3G57150 34.715 1.28e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02157 K03177 - zju:107415230 678.707