Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02154 ATGGACATGAGATCGCCGTCAAGAGACTTTCACAAAGATCAGAACAATGATCAAAAGAATTTACAATTGAGGTGTGGTTTAAATTTGTCTGTACTGGGATCAGTTGATGTTGTTCTAAAACTGTTGAGGAATATTTCTAGAGAGCCTGAGAATGTCAAGTTCAGGAAGATTAGGATGAGTAATCCAAAGATAAAAGAGGCTATTGGTGATGTTACTGGTGGAGTTGAGTTGCTTAACTTTCTAGGATTTGAACCCAGGGAGGAGACATGGGGAGACATGGGCAGTGATGGAGGTTCCTACAGAGGAGCAAGTAAAGTTAATTAA 324 0.3981 MDMRSPSRDFHKDQNNDQKNLQLRCGLNLSVLGSVDVVLKLLRNISREPENVKFRKIRMSNPKIKEAIGDVTGGVELLNFLGFEPREETWGDMGSDGGSYRGASKVN* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02154 107 Gene3D - 28 94 - -
Rops5g02154 107 SMART PGNneu 33 95 - -
Rops5g02154 107 Pfam PUB domain 33 88 IPR018997 -
Rops5g02154 107 CDD PUB 32 88 - -
Rops5g02154 107 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 12 89 - -
Rops5g02154 107 SUPERFAMILY PUG domain-like 32 90 IPR036339 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02154 Rops-Chr5 46720564 46721141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02154 10 93 C2H2 Transcription Factor Family AT2G01650 53.846 1.93e-22 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02154 K14011 - gmx:100779271 100.523