Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02150 ATGTATGCTCTCTGTTCATTAGCATTTCAGATAGTGTTTCTTTACTTTGCTTGTCTAAACATGTCTTCCTCTGGAACATGGACTGTTGAGGATAATAAAGCTTTTGAAAGAGCTTTAGCTATTTATGACAAGGAAACCCCTGATCGATGGTGCAATATTGCAAGGGCTGTTGGTGGAAAAACTCCACAACAAGTGAAGAGGCACTATGAGCTCCTTCTGGAGGACATTCACCGTATTGAGTCAGGTCAAGTTCCCTTTCCAACATACAGTAACCCCAAGGAAGGCGCGTGA 291 0.4261 MYALCSLAFQIVFLYFACLNMSSSGTWTVEDNKAFERALAIYDKETPDRWCNIARAVGGKTPQQVKRHYELLLEDIHRIESGQVPFPTYSNPKEGA* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02150 96 ProSiteProfiles Myb-like domain profile. 25 73 IPR001005 -
Rops5g02150 96 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 22 92 IPR044636 GO:0003700
Rops5g02150 96 SMART sant 23 75 IPR001005 -
Rops5g02150 96 Gene3D - 19 86 - -
Rops5g02150 96 FunFam Transcription factor SRM1 19 86 - -
Rops5g02150 96 Pfam Myb-like DNA-binding domain 25 70 IPR001005 -
Rops5g02150 96 CDD SANT 26 73 IPR001005 -
Rops5g02150 96 SUPERFAMILY Homeodomain-like 25 81 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02150 Rops-Chr5 46523602 46523892 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops5g02150 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02150 - - aprc:113867554 132.88