Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02114 ATGGAGAGGCTCCAAAGCTTTATTGTCAATGGGGGTATCAAATTGCCTATTGGGTACAGGTTTTGTCCCACAGATGAAGAGCTTCTCATTCACTACCTCAAGAAGAAGGCCTTTGCTGAACCATTGCCATGTTCTGTCATTTCAGAGTTCGATGTGTTTCAGACTGAGCCTTGGGGCCTCCCAGGTGATTTGAAAGAAAAGAGGTATTTTTTTAGCAATAGAAAGGGTGATGTCTATGGAAACATCAACAAAAGGCCTGCTGGTTCTGGGTATTGGAAATCTATAGGCAAAGACAAACAACTTCTGGCTTCTGAGAAAAACCAAGTAATTGGGATGAGGAAAACACTAGTTTTCTGGAAAGGGAAAAGGTCACATGAAACTAGAACTCAGTGGGTCATGCATGAATTGCACCTTGTAAGCTCTGGATTAACATCCTACCCATGTCAGATGCCGGTGGCAGATTTTGCTGTGTACCGCATATTTCAGAAGAAGAAGAAGAAGCTCAACACCAAAAAGTCTAATCAGAAGCTCTCTAGCAGCAGGAAAGTTCCAAGACTAGAAGATATTAAAGCTAGTTTCATAGATTTTAAAGGGGAATTTGGTGATGATACAGGCACTCCCCCACCTGGTTCCCCTTGTCTCAGTGAAGCCAGCAGTGAAATCTCCTCTTTAACTAGTTAG 681 0.4258 MERLQSFIVNGGIKLPIGYRFCPTDEELLIHYLKKKAFAEPLPCSVISEFDVFQTEPWGLPGDLKEKRYFFSNRKGDVYGNINKRPAGSGYWKSIGKDKQLLASEKNQVIGMRKTLVFWKGKRSHETRTQWVMHELHLVSSGLTSYPCQMPVADFAVYRIFQKKKKKLNTKKSNQKLSSSRKVPRLEDIKASFIDFKGEFGDDTGTPPPGSPCLSEASSEISSLTS* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02114 226 SUPERFAMILY NAC domain 11 163 IPR036093 GO:0003677|GO:0006355
Rops5g02114 226 PANTHER NAC TRANSCRIPTION FACTOR 56 15 173 - -
Rops5g02114 226 Gene3D NAC domain 24 169 IPR036093 GO:0003677|GO:0006355
Rops5g02114 226 Pfam No apical meristem (NAM) protein 16 138 IPR003441 GO:0003677|GO:0006355
Rops5g02114 226 MobiDBLite consensus disorder prediction 211 226 - -
Rops5g02114 226 MobiDBLite consensus disorder prediction 198 226 - -
Rops5g02114 226 ProSiteProfiles NAC domain profile. 15 163 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02114 Rops-Chr5 45941255 45943078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02114 7 165 NAC Transcription Factor Family AT5G13180 49.375 3.52e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops5g02114 NAM 5.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02114 - - gmx:100815663 266.929