Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02108 ATGTTGTTTTGTCTTGCTGTGATTTCTTTGATTCAATTGTGGAGGGGAAAGAAAGCCATCAATGAATGGTTTTTAGGGGTTTTTGTTTGGGATTGTTTTGGTGATAAGTTACAGATTCGACAAAAAGGACGTGAAATTTTGGGTTCAGAAGCTCAGGACTTGTTCTCCAGTTGCCCAAATTGCAATGAGAAATTGGTGGTTTCCGCCGCCGCCACTGTCGGTGAAACAATAGCAATGGTGGCAACCATAGCAGTTTTTGTACACTTTTGTGGAGGGCAAAACCAAGATCTGGTCCCTCTCACTTCCTCTCTTACCAAGGCACTTGTGGGCCTCAAGAACAAGTACCTTTGTTTTGCAGAGATCTGGGATTCTCATGCAAAGGAATTGCAAATGGGAAAGAAAGGGAGTTGGTTTTCTGCAGTGAAGAAAGTTTTTAGTCATGATTCCAGAAAAGATAAGAAAAGTCGCAAGTCAAAGAAAAAATGTATCCAAAAGGATTCAGAACTGGCATCTGAAGAAGCACCAGTTGCTGTTGCTTCCTCTGTTCCACCATTAGAAGATGTTAAACTAACTGAGGCTGAGAATGAACAAAGCAAACATGCTTATTCTTTGGCTTTTGCCACTGCTGTCGCTGCAGGGGCTGCAGTTGCTGCTGCTCAGGCTGCTGCAGAGGTTGTTCGTCTCACGAGTATGCCTCGTTACCCTGGAAAGACAAAGGAAGAAATAGCAGCTATTAAGATTCAAACTGCATACCGCGGATATTTGGCAAGAAGGGCATTGCGTGCCTTGAGAGGTTTGGTGAGGTTGAAAACATTGGCACAAGGGCAATATGTTAAAAGGCAAGCAACTAGTACCTCACGATGCATGCAAACTCTAGCAAGACTGCAGTCTCAGGTTCGCGAAAGAAGAATCAGAATGTCTGAGGAGAACCAGGCTCTTGAGCGGCAACTACAACAGAAACATGAAAAGGAACTTGAGAAATTGCAAGCTGCTCAGGTTGGAGAAGAATGGGATGATAGCTTGCAGTCAAAGGAGCAAATTGAAACAAAATTGTTGCACAGACAAGAAGCTGCTTTGAGAAGAGAGAGGGCTTTGGCCTATTCATTCTCACATCAGCAAACATGGAAGAACTCTTCAAAATCAGTAACCCCCACATTTATGGACCCAAACAATCCCCACTGGGGCTGGGGTTGGCTAGAGAGATGGATGGCTTCTAGGCCATGGGAGGGCAGCAATGATCATGCATCTGTAAAGAGTGCAGCAAGCCATACCATCTCTATTGGGGAAATCAACAAATTGTATTCTCACAATCATGATAACAAACCTTCTCCTGTTGGTCAAAAAGCAAGAAGACCTGCCACTCCTTCAACGCCAGCTTCAAAGGCCCCATCTTCATCATCTGTTAATGGAAAGGCAAGGCAATTAAGCTCAAAGGGTAGTGCTTGGGGTGGTGATGATGACTCAAGAAGCATGTTAAGTGTTCAATCCGAACGTTTTCGAAGATATAGCATTGCAGGATCATCAGTGAGAGATGATGAGAGCCTTGCAAGCTCACCTGCATTTCCAAGTTACATGGCACTCACAAGTTCAGCAAAGTCCAGATCCAAAATGCAAAGACCATCACCATCTAGTAAAGATAGAAATGGTTATGGAACACCTGATAAAGGAGCTGCTGCTGTTTCTGCAAAGAAGAGGCTTTCTTTCCCTGCTTCTCCAGCTGGTTCAAGAAGGCATTCTGGTCCTCCTAAGGTGGAAATGTTTTCCAACAAGGATGTTGCTACTGTCACTTATGAGAAAGTAAGCAATGGAGGAAGCAGGTAG 1821 0.4415 MLFCLAVISLIQLWRGKKAINEWFLGVFVWDCFGDKLQIRQKGREILGSEAQDLFSSCPNCNEKLVVSAAATVGETIAMVATIAVFVHFCGGQNQDLVPLTSSLTKALVGLKNKYLCFAEIWDSHAKELQMGKKGSWFSAVKKVFSHDSRKDKKSRKSKKKCIQKDSELASEEAPVAVASSVPPLEDVKLTEAENEQSKHAYSLAFATAVAAGAAVAAAQAAAEVVRLTSMPRYPGKTKEEIAAIKIQTAYRGYLARRALRALRGLVRLKTLAQGQYVKRQATSTSRCMQTLARLQSQVRERRIRMSEENQALERQLQQKHEKELEKLQAAQVGEEWDDSLQSKEQIETKLLHRQEAALRRERALAYSFSHQQTWKNSSKSVTPTFMDPNNPHWGWGWLERWMASRPWEGSNDHASVKSAASHTISIGEINKLYSHNHDNKPSPVGQKARRPATPSTPASKAPSSSSVNGKARQLSSKGSAWGGDDDSRSMLSVQSERFRRYSIAGSSVRDDESLASSPAFPSYMALTSSAKSRSKMQRPSPSSKDRNGYGTPDKGAAAVSAKKRLSFPASPAGSRRHSGPPKVEMFSNKDVATVTYEKVSNGGSR* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02108 606 SMART iq_5 239 261 IPR000048 GO:0005515
Rops5g02108 606 MobiDBLite consensus disorder prediction 434 489 - -
Rops5g02108 606 Coils Coil 296 326 - -
Rops5g02108 606 Pfam IQ calmodulin-binding motif 243 261 IPR000048 GO:0005515
Rops5g02108 606 ProSiteProfiles IQ motif profile. 240 268 IPR000048 GO:0005515
Rops5g02108 606 MobiDBLite consensus disorder prediction 453 476 - -
Rops5g02108 606 MobiDBLite consensus disorder prediction 527 548 - -
Rops5g02108 606 PANTHER IQ-DOMAIN 5-RELATED 131 581 - -
Rops5g02108 606 MobiDBLite consensus disorder prediction 527 606 - -
Rops5g02108 606 Gene3D iswi atpase 237 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02108 Rops-Chr5 45851142 45866169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02108 131 585 IQD Protein Family AT5G03040 49.170 7.95e-128 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02108 - - lja:Lj0g3v0301539.1 590.497