Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops5g02074 | ATGAATAAAGCCAATAAAATTTGCGCCAGAGATGAAGAGCGTCCAACCAGAATCACCAGAGCAAGGGCTAGAGCCTTGGGATCCTTAGGAGGAGTTCCTTCCTACTCAAAACCCTCTTTTTGGTCCATGAAACATTGGATAGGGAAGCCATTTGGGTCTAAAGTATTCAGCAGCAAGGGTGGTTTTGTATACTTGTTAGCTCCCACACCAGAATTATGGACTTTAGTGTTAAGCCACAGGACTCAAATTCTCTATTTTGCGGATGTTAGCTTTGTTATCATGTACTTGGAGATTGTTCCTGGTTGTTTGGTTCTTGAATCTGGAACTGGAAGTGGATCTTTGACTACTTCACTTGCTAGGGCAGTTGCTCCTACAGGACTTGTCTATACATTTGATTTCCACAAACAAAGGGCTCAATCAGCTAGGGATGATTTTGAGAGGACAGATATAAGGACACAACAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTGGCCCATGTAGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACATCGTATAGGGAGGACGGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGACAACAATGCATCCCTAGCTAAGGCTTTAGCAGATCTGATGCAGGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCGCGGTATGCTGCCCGATCTTCCTTTGGCGGAGGAAGGAACCGTCGATCAGGAGGCCGTTTTGGTGGCTGTGACTTTCGAAGAGAAGGTTCTTTTGGTCGGGGTGGTTCTGATTACCATGGTGCAGGAAACAGCAGTGGTGGTTCATGCCACAAGAGCTGGCTTAAACCCTCAGGTTACAACCCAGAAGGTAGCTGCATTGGCACGTCAAGGAGCTCTTCAGGGAAGGTGGCAAGCAGGTCTCGTTCGTGA | 993 | 0.4612 | MNKANKICARDEERPTRITRARARALGSLGGVPSYSKPSFWSMKHWIGKPFGSKVFSSKGGFVYLLAPTPELWTLVLSHRTQILYFADVSFVIMYLEIVPGCLVLESGTGSGSLTTSLARAVAPTGLVYTFDFHKQRAQSARDDFERTDIRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLAKALADLMQEANQEVPAWLSRYAARSSFGGGRNRRSGGRFGGCDFRREGSFGRGGSDYHGAGNSSGGSCHKSWLKPSGYNPEGSCIGTSRSSSGKVASRSRS* | 331 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops5g02074 | 330 | MobiDBLite | consensus disorder prediction | 308 | 330 | - | - | |
| Rops5g02074 | 330 | SMART | helicmild6 | 132 | 212 | IPR001650 | - | |
| Rops5g02074 | 330 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 37 | 150 | IPR029063 | - | |
| Rops5g02074 | 330 | Gene3D | - | 132 | 255 | IPR027417 | - | |
| Rops5g02074 | 330 | Gene3D | - | 39 | 69 | - | - | |
| Rops5g02074 | 330 | MobiDBLite | consensus disorder prediction | 310 | 330 | - | - | |
| Rops5g02074 | 330 | Pfam | Helicase conserved C-terminal domain | 152 | 212 | IPR001650 | - | |
| Rops5g02074 | 330 | PANTHER | TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE | 43 | 195 | IPR014816 | GO:0016429|GO:0030488|GO:0031515 | |
| Rops5g02074 | 330 | ProSiteProfiles | tRNA (adenine(57)-N(1)/adenine(58)-N(1) or adenine(58)-N(1)) (EC 2.1.1.219 or EC 2.1.1.220) family profile. | 1 | 147 | IPR014816 | GO:0016429|GO:0030488|GO:0031515 | |
| Rops5g02074 | 330 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 117 | 251 | IPR001650 | - | |
| Rops5g02074 | 330 | Pfam | tRNA methyltransferase complex GCD14 subunit | 61 | 185 | IPR014816 | GO:0016429|GO:0030488|GO:0031515 | |
| Rops5g02074 | 330 | CDD | SF2_C_DEAD | 151 | 221 | - | - | |
| Rops5g02074 | 330 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 152 | 264 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops5g02074 | Rops-Chr5 | 44492991 | 44494239 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops5g02074 | 153 | 244 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 39.130 | 6.77e-19 | 85.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops5g02074 | K11594 | - | gmx:100784557 | 248.054 |