Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02066 ATGGAGAGAGAGATGTTACCCTGGATGGAACCCCAACCTGAAGAAACCAGAACCACCAACAACAGCAACAACGTTGGTGACATAAAAAACGACGACGTTTCAGGGATTAGTGATGGAAACCTTTCTTCCTTTAAATCAATGCTTGAAGGTGAATGGTACATTAACCCAACTCACCATGAGGAACTTCTTCTAAACCTTCAAACCCAAACACAAACAACTAGTGACATTGATTTTTCTTCAGACCCAAACAGTGGTTTTCTTATGCAGCATGCTTTGGATTCATTCGACCAATCTTCACATTCACAACCCTTTTTGCCACCCAAATCGTGTTTCTCACCTTTCTTTAACATCAACAGCAGCAGCAGCAGCAGCAGTAACAACAACAACCCTTTTGATAATGGCTTCGATTTGGGCTCACATGGTGGTTTTCTTGCTTCAAATTCCTCTGTTTTGATGGGATTCACACCCCAAATGGGGGAGCTGAGTTCCAACGCCGAGTTTACAACTCGGGCTGTTGAACTCAGCACCGGGTTTGTCCCAATGGGTGTAGAAGAACAAGATTTTCATGGTTCTGGGCCTTCTAATGCTCTGTTTTCGAGCAAGTCGAAGATTTTGAGGCCACTGGAGGCTCTTCCTCCGGTGGGTGCGCCGCCCACTTTGTTTCAGAAGCGGGCGGCACTTCACCAAGGCTCCGTCTCCGGCGGTGGGGCCGATAAGTTAGGAGCCTTGGTGGTTTCCGCGCAGCCGCGGTTTGTTGGTTTAGCGGAATTGGAGAAGAGGAGGAAGAAAATGGAAGAGGGGGAGGTTGAGGAAGGGTTGAATTATGACTCTGATGAGGTTATTGAGGTTGGGAAGATGGAGGAGGATGGGAATAATGGGGGTAACAATTTTAATGCAAATAATAATAATGACGATAACAATAATGTTAATGATGATGATAATGGTGTTAGTGTTGCTGGTGGAGACCAGAAGGGGAAGAAGAAGGGGATGCCAGCAAAGAATCTCATGGCTGAGAGGCGGCGTAGGAAGAAACTCAATGATAGGTTGTATATGCTTCGGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGATTACTTGAAGGAGTTACTACAACGGATTAATGATCTTCATAATGAGCTAGGGTCAAGCTCACCTAGCTCATCTTTGCCACCTTCTACAAGCTTTCACCCTGTGACACCCACTCCGCCAACCCTTCCCTGCCGGGTGAAGGAAGAACTATGTCCTAGCTCTGTGCCAAGCCCTAAAAACCAGTCAGCAAAGGTGGAGGTTAGGGTCAGGGAAGGGAGAGCTGTCAATATCCATATGTTTTGCGCCCGCAGACCAGGTCTCTTGCTTTCCACCATGAGGGCATTGGATATCCTTGGTTTGGATGTTCAGCAGGCTGTTATCAGCTGTTTCAATGGTTTTGCTTTAGATGTTTTCAGAGCTGAGCAGCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATCAAAGCGGTACTGTTGGATACAGCAGGTTTCCATGGTAAGATGTGA 1566 0.4668 MEREMLPWMEPQPEETRTTNNSNNVGDIKNDDVSGISDGNLSSFKSMLEGEWYINPTHHEELLLNLQTQTQTTSDIDFSSDPNSGFLMQHALDSFDQSSHSQPFLPPKSCFSPFFNINSSSSSSSNNNNPFDNGFDLGSHGGFLASNSSVLMGFTPQMGELSSNAEFTTRAVELSTGFVPMGVEEQDFHGSGPSNALFSSKSKILRPLEALPPVGAPPTLFQKRAALHQGSVSGGGADKLGALVVSAQPRFVGLAELEKRRKKMEEGEVEEGLNYDSDEVIEVGKMEEDGNNGGNNFNANNNNDDNNNVNDDDNGVSVAGGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELGSSSPSSSLPPSTSFHPVTPTPPTLPCRVKEELCPSSVPSPKNQSAKVEVRVREGRAVNIHMFCARRPGLLLSTMRALDILGLDVQQAVISCFNGFALDVFRAEQQCREGQDVLPEQIKAVLLDTAGFHGKM* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02066 521 Pfam Helix-loop-helix DNA-binding domain 336 378 IPR011598 GO:0046983
Rops5g02066 521 FunFam BHLH transcription factor 325 393 - -
Rops5g02066 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 396 IPR036638 GO:0046983
Rops5g02066 521 CDD ACT_UUR-ACR-like 449 510 - -
Rops5g02066 521 SMART finulus 335 384 IPR011598 GO:0046983
Rops5g02066 521 MobiDBLite consensus disorder prediction 389 411 - -
Rops5g02066 521 MobiDBLite consensus disorder prediction 13 36 - -
Rops5g02066 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 378 IPR011598 GO:0046983
Rops5g02066 521 MobiDBLite consensus disorder prediction 1 36 - -
Rops5g02066 521 MobiDBLite consensus disorder prediction 287 342 - -
Rops5g02066 521 MobiDBLite consensus disorder prediction 291 314 - -
Rops5g02066 521 MobiDBLite consensus disorder prediction 389 403 - -
Rops5g02066 521 Gene3D - 323 392 IPR036638 GO:0046983
Rops5g02066 521 CDD bHLH_AtAMS_like 332 390 - -
Rops5g02066 521 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 139 517 - -
Rops5g02066 521 MobiDBLite consensus disorder prediction 326 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02066 Rops-Chr5 44244061 44248702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02066 42 493 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 52.331 2.30e-126 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops5g02066 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02066 - - pcin:129305251 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02383 8 55204865 55208819 Rops5g02066 5 44244061 44248702 PCT