Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02062 ATGAGCAATAACAGTGATAATAGCACCTTCTTCACAATCCCACATGGGCAAAACACTTCTGAATTTGTTGAGAGGCAGGACCCATCTCAACCTATGCATCAAGGCAATGAAAGGAAAAAACATTATAGAGGTGTTAGGCAGAGACCATGGGGCAAATGGGCAGCTGAAATAAGAGACCCTAAGAAACAAGCTAGAGTGTGGCTTGGTACGTTTGACACAGCAGAAGCTGCAGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGAAACAAAGCAAAGCTCAATTTCCCTGAACTTGTTGCTTTGCAAGCAGATCCATCAACTAATAATAATAATGCTTCAGCTTCTGCACAATCTATTCCTCAACCCTCACTTGAGTTTGGTCAACAACCTCTTCCATTTTCATCATCGGAAGAAGGGTTTCCAAACCTAATGCAGTATGCTGAGGTGCTTTGTAGTAGGAATGATGATGATCTTCAACGTGCTGCTTCAGGTCTTTACTTTCATCACAATGAGCAAGCAGAACCATTCTTCTCATCATCGTCAAATTCTAAGGCTGTTGTGCCTGATCAATATCAGGTTGGAGATTATGGGTCTTATTATTTTGATAAAGGTTGTGGTTTTGATGAAAGTAACTCAAGGGGATCATAG 654 0.4144 MSNNSDNSTFFTIPHGQNTSEFVERQDPSQPMHQGNERKKHYRGVRQRPWGKWAAEIRDPKKQARVWLGTFDTAEAAAAAYDAAALKFKGNKAKLNFPELVALQADPSTNNNNASASAQSIPQPSLEFGQQPLPFSSSEEGFPNLMQYAEVLCSRNDDDLQRAASGLYFHHNEQAEPFFSSSSNSKAVVPDQYQVGDYGSYYFDKGCGFDESNSRGS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02062 217 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Rops5g02062 217 Gene3D AP2/ERF domain 40 100 IPR036955 GO:0003700|GO:0006355
Rops5g02062 217 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Rops5g02062 217 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Rops5g02062 217 MobiDBLite consensus disorder prediction 1 47 - -
Rops5g02062 217 MobiDBLite consensus disorder prediction 106 129 - -
Rops5g02062 217 PANTHER DNA-BINDING DOMAIN 28 164 IPR044808 GO:0003700|GO:0009873
Rops5g02062 217 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Rops5g02062 217 CDD AP2 40 100 IPR001471 GO:0003700|GO:0006355
Rops5g02062 217 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Rops5g02062 217 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Rops5g02062 217 MobiDBLite consensus disorder prediction 1 30 - -
Rops5g02062 217 FunFam Ethylene-responsive transcription factor 2 40 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02062 Rops-Chr5 44173887 44175694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02062 26 122 AP2-EREBP Transcription Factor Family AT5G61890 66.346 1.95e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops5g02062 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02062 - - gmx:100796480 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g02062 5 44173887 44175694 Rops8g02396 8 55482894 55484616 PCT