Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02044 ATGCAGTCCTATCTGGACAGCCATATTGACCCCGAAGGATGGGCAGAATGGACTGAACAAACTAAGGACTATTTGCAAACATTGTACTATGGAGAGTACAATAATTATGGACCAGGTGCCGATACAAGTAAGAGAGTGAAATGGCCTGGTTACCATATCATCACTAATGAAGCAGAGGCTAGCAAGTTCACTGTAACACAGTTCATCGGTAGTGATTGGTTGAAGAACACCGGGGTGAACTACACTGAGGGCCTCTAA 258 0.4457 MQSYLDSHIDPEGWAEWTEQTKDYLQTLYYGEYNNYGPGADTSKRVKWPGYHIITNEAEASKFTVTQFIGSDWLKNTGVNYTEGL* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02044 85 Gene3D - 1 85 IPR012334 -
Rops5g02044 85 PANTHER PECTINESTERASE 1 75 - -
Rops5g02044 85 Pfam Pectinesterase 1 71 IPR000070 GO:0030599|GO:0042545
Rops5g02044 85 SUPERFAMILY Pectin lyase-like 1 84 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02044 Rops-Chr5 43641452 43641709 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02044 1 85 Carbohydrate Esterase AT1G11580 55.814 8.55e-27 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02044 K01051 - gmx:100815836 139.043