Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02041 ATGGAGGGGAATATCAGTTTGGACGGCGATAATACTGCAAGTCTTCAACCAGTTGTAGATCCTGACAGTATGCAAGATTCAAAGAAGAGCAAGGCCAAAGATGAAACCACCAACACAGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATCATTTATTGATGTTTGTGGGCACTGTGGGAGCTATTGGGAATGGAATCTCCATGCCCTTAATGACTTTAATATTTGGAAATATGATCAATGCATTTGGAGGATCTGCAGACACCAAAGAAGTTGTTGATGAAGTTTCCAAGGCTGCAAGAATTAGAGGCTTATACCTTCAAACAATATTGAGGCAAGATGTGAGCTTCTTTGATAAGGAAACTAATACTGGAGAGGTTGTTGGAAGGATGTCAGGTGAAACTGTTCTTATTCAAGATGCCATGGGTGAAAAGATAAATTCATCCCAGTATTTCAAGAAGCAGCAAAACATTTCAAGGGAAGTTAACTTGGAGTCAGTAGATGTAGTGTGCTTAGAGCCTGGTTGCATGAAACATTTCACCAATGCCCAGTGCCTAAGAGCCCATGTTAACTCGTGCCATCAATATGAGACTTGTGTCACTTGTGGGACTAAGCAACTGAAGAAGAATATTAAGAGGCACCTCAGCACACATGAATCTAGCAGTTCATCAGAGACCTTTAAATGTGAATTTAAGGGTTGTGACTGCACATTCTCAAGTGGGGATTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCCGGGGGAGGGAAGAAGAGAAAATATCCTACTGTTGAAATAATAGTGAGGAAGAGAGTTACCCCACCAAGTCAATTAGAGAACTGGTTACTTATGCAGGATAGTGAGGAAGATGTGCATTGA 888 0.411 MEGNISLDGDNTASLQPVVDPDSMQDSKKSKAKDETTNTVPLYKLFSFADPLDHLLMFVGTVGAIGNGISMPLMTLIFGNMINAFGGSADTKEVVDEVSKAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGETVLIQDAMGEKINSSQYFKKQQNISREVNLESVDVVCLEPGCMKHFTNAQCLRAHVNSCHQYETCVTCGTKQLKKNIKRHLSTHESSSSSETFKCEFKGCDCTFSSGDFEEADEEFRSRPGGGKKRKYPTVEIIVRKRVTPPSQLENWLLMQDSEEDVH* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02041 295 PANTHER ABC TRANSPORTER B FAMILY 23 149 IPR039421 -
Rops5g02041 295 Pfam ABC transporter transmembrane region 102 149 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g02041 295 ProSitePatterns Zinc finger C2H2 type domain signature. 173 196 IPR013087 -
Rops5g02041 295 MobiDBLite consensus disorder prediction 1 33 - -
Rops5g02041 295 Gene3D ABC transporter type 1, transmembrane domain 100 153 IPR036640 GO:0005524|GO:0016020
Rops5g02041 295 Gene3D ABC transporter type 1, transmembrane domain 36 99 IPR036640 GO:0005524|GO:0016020
Rops5g02041 295 MobiDBLite consensus disorder prediction 1 23 - -
Rops5g02041 295 SUPERFAMILY ABC transporter transmembrane region 45 148 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02041 Rops-Chr5 43539360 43542797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02041 157 241 C2H2 Transcription Factor Family AT1G72050 55.294 3.02e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02041 K05658 - gmx:100800293 217.624