Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02033 ATGGTCACAGTGAGTAGGTTGCTGCCACAACAAGTAGAGAAGTTGATGGCTACCTATCTAGGCACTCGAGTATGCCACTCCAGTTTGTTGGCCAGCATTTCACGTGAACGTAGGAGATGGCTACCGCCTCCCCTACTGTTGCAGCTCAATCTCTCCCACGTGGGTGTGTGGCTGCATGCAGAAGAGAATGTGGGTCCATGGAGGAATGAGGTCGCACGAGTGGCTCTAGAACCATGTCCTGGGACTGTTCCTCCTGAGGAACATCCGCTAGCACAGGCACCAAATCTGGTGGTTGCTCCACTTTCAACATTGCGGAACTGGGAACGTGAATTTGCAACATGGGCACCTCAGATGAACGTCGTTATGTATGTGGGATCTGCCCAAGCTCGTAGTGTTATAAGAGAGTATGAATTTTACTTTCCTAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCAGATAGTTGGTGAAAGCAAGCAAGACCGGATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATCAACGTTGACACCACATCATTAAAACCTATAAAATGGGAGTATATGATAGTTGATGAAGGTCATCGTCTAAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTGCTCTTGACTGGGACTCCTCTTCAGAATAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCCGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGTTGGCCCCGCATCTCCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTGCGTGTTGAATTAAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGAGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAACCAGATATTGATGATGCAAAAGAATCATTCAAACAGCTGCTTGAATCAACTGGGAAGTTAAAGAGCAAGGACATAGAGATAGATGGCAAGGTTGGCGGAGCTGAAAGACAAGTACGGATAGATCGTTTCAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGACTGGGGATAAACCTCGCAACTGCTGACACAGTTGTTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGAGGAAGCCCTACACGGCCAGTGCAGCCTCCATACCCGGCCTGGTACAACCCAAGTTTGTCCTGTAAATATCATATGGGTGTTGTGGGCCACTCGATAGAAATTTGTGACGGATTCAAATTTATGGTGAGAAAATTGATTGCTTGTGGAAGACTAGATATCGGAGGAGAGAAAGGACTCAACATTGTTAACAATCCGATACCCAATCAGGGGGGAAGAGGTGGTGTGAACGTTATTGAAAAGGAGGGGGCTCTAATCAAGGAGGTGTCTGGAGAGCTGAAGGAAGGGAGCAAGACTTGTCTCGCGGCTGACCAAGAATTGCTAGAGAATCGGGAATCAGATCTCATTATTGATGTAGTTGCTTCAAAGCCTCAGATGAATGATGCAGTTGGGGCAGCAAATAAGAACATCAAGGAGATTGTTGCAAAGATGACAGAAAATTACAAAGATAAGTACTGA 1827 0.4291 MVTVSRLLPQQVEKLMATYLGTRVCHSSLLASISRERRRWLPPPLLLQLNLSHVGVWLHAEENVGPWRNEVARVALEPCPGTVPPEEHPLAQAPNLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQIVGESKQDRIKFDVLLTSYEMINVDTTSLKPIKWEYMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKESFKQLLESTGKLKSKDIEIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGSPTRPVQPPYPAWYNPSLSCKYHMGVVGHSIEICDGFKFMVRKLIACGRLDIGGEKGLNIVNNPIPNQGGRGGVNVIEKEGALIKEVSGELKEGSKTCLAADQELLENRESDLIIDVVASKPQMNDAVGAANKNIKEIVAKMTENYKDKY* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02033 608 SMART ultradead3 3 254 IPR014001 -
Rops5g02033 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 503 IPR001650 -
Rops5g02033 608 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 92 370 - -
Rops5g02033 608 Gene3D - 284 372 IPR027417 -
Rops5g02033 608 Gene3D - 373 460 IPR027417 -
Rops5g02033 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 458 IPR027417 -
Rops5g02033 608 Pfam SNF2-related domain 93 345 IPR000330 GO:0005524|GO:0140658
Rops5g02033 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 243 IPR014001 -
Rops5g02033 608 CDD SF2_C_SNF 376 455 - -
Rops5g02033 608 Gene3D - 82 283 IPR038718 -
Rops5g02033 608 Pfam Helicase conserved C-terminal domain 355 444 IPR001650 -
Rops5g02033 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 278 IPR027417 -
Rops5g02033 608 SMART helicmild6 361 444 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02033 Rops-Chr5 43111441 43119158 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02033 374 459 RAD5 or RAD16-like Gene Family AT5G22750 37.209 4.10e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops5g02033 SNF2_N 7e-58 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02033 K11643 - gmx:100790230 665.225