Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02032 ATGGTCACAGTGAGTAGGTTGCTGCCACAACAAGTAGAGAAGTTGATGGCTACCTATCTAGGCACTCGAGTATGCCACTCCAGTTTGTTGGCCAGCATTTCACGTGAACGTAGGAGATGGCTACCGCCTCCCCTACTGTTGCAGCTCAATCTCTCCCACGTGGGTGTGTGGCTGCATGCAGAAGAGAATGTGGGTCCATGGAGGAATGAGGTCGCACGAGTGGCTCTAGAACCATGTCCTGGGACTGTTCCTCCTGAGGAACATCCGCTAGCACAGGCACCAAATCTGGTGGTTGCTCCACTTTCAACATTGCGGAACTGGGAACGTGAATTTGCAACATGGGCACCTCAGATGAACGTCGTTATGTATGTGGGATCTGCCCAAGCTCGTAGTGTTATAAGAGAGTATGAATTTTACTTTCCTAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCAGATAGTTGGTGAAAGCAAGCAAGACCGGATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATCAACGTTGACACCACATCATTAAAACCTATAAAATGGGAGTATATGATAGTTGATGAAGGTCATCGTCTAAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTGCTCTTGACTGGGACTCCTCTTCAGAATAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCCGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGTTGGCCCCGCATCTCCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTGCGTGTTGAATTAAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATTAG 948 0.4304 MVTVSRLLPQQVEKLMATYLGTRVCHSSLLASISRERRRWLPPPLLLQLNLSHVGVWLHAEENVGPWRNEVARVALEPCPGTVPPEEHPLAQAPNLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQIVGESKQDRIKFDVLLTSYEMINVDTTSLKPIKWEYMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNY* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02032 315 SMART ultradead3 3 254 IPR014001 -
Rops5g02032 315 Pfam SNF2-related domain 93 311 IPR000330 GO:0005524|GO:0140658
Rops5g02032 315 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 92 315 - -
Rops5g02032 315 Gene3D - 288 315 IPR027417 -
Rops5g02032 315 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 243 IPR014001 -
Rops5g02032 315 Gene3D - 91 287 IPR038718 -
Rops5g02032 315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 278 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02032 Rops-Chr5 43106357 43107470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02032 90 314 RAD5 or RAD16-like Gene Family AT5G22750 25.514 6.11e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops5g02032 SNF2_N 3.4e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02032 K11643 - gmx:100790230 415.616