Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02031 ATGCTGGACCTGCTTGAAGATTACTGTTCTTACAAGAATTGGCTGTATGAAAGGATAGATGGCAAGGTTGGCGGAGCTGAAAGACAAGTACGGATAGATCGTTTCAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGACTGGGGATAAACCTCGCAACTGCTGACACAGTTGTTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGAGGTACTATTGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACACCTTGTTGTAGGGAGGACTAAACAAAGGTCAATATGA 393 0.402 MLDLLEDYCSYKNWLYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRTKQRSI* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02031 130 SMART helicmild6 3 87 IPR001650 -
Rops5g02031 130 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 130 IPR001650 -
Rops5g02031 130 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 125 - -
Rops5g02031 130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 123 IPR027417 -
Rops5g02031 130 Gene3D - 1 129 IPR027417 -
Rops5g02031 130 CDD SF2_C_SNF 1 98 - -
Rops5g02031 130 Pfam Helicase conserved C-terminal domain 12 87 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02031 Rops-Chr5 43105761 43106153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02031 1 116 RAD5 or RAD16-like Gene Family AT5G22750 39.831 1.19e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02031 K11643 - gmx:100804203 252.292