Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02019 ATGAAGTTATGCAAAGCAGATGTGTCAACTGTTTGCCTTGGGCTTGCAGCATCCGTGGGTGCATTTATTCTCGCTGCTGGTTCAAAAGGGAAGGGCTACTCTTCCTCTTCACGTCGCAGGTTTGGTTCCAGTTCCAACACCAACACGGTTCGTGCCACTGCTGTTGAGACACTTGACAAGACAGCTGAGGTTTCTCTGGTGGAGAAGTCTATCAACACCATTAGGTTCCTTTCCATTGATGCAGTTGAGAAGGCCAATTCTGGTCACCCTGGTCTTCCCATGGGAACTCCAGGACATCCTGAGAATTTTGAGACTCTTGGAATTGAAGTAACCACAGGTCCTTTGGGTCAGGGCATTGCCAATGCTGTTGGATTGGCACTTGCTGAGAAGCACTTGGCTGCACGGTTTAACAAGCCTGACAATGAGATTGTTGACCATTACACGTATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCAAATGAAGCATCCTCACTTGCTGGACACTGGGGTCTAGGAAAGCTTATTGCTTTCTATGATGACAACCACATTTCCATTGATGGTGACACAGATATTGCATTCACTGAGAACGTTGATGAACGTTTCGAGGCACTTGGATGGCATGTAATTTGGGTAAAGAATGGAAATACTGGGTACGATGACATCCGTGCAGCCATTAAGGAAGCAAAGGCTGTCAAAGACAAACCCACTTTGATCAAGGTAACCACTACCATTGGATATGGTTCTCCAAACAAGGCCAACTCCTACAGTGTTCATGGAAGTGCATTGGGTGCTAAAGAGGTGGATGCTACAAGGAAGAATCTTGGATGGCCATATGAGCCTTTCCATGTGCCAGAAGATGTTAAAAAGCATTGGAGTCGCCATGTCCCTGATGGTGCTGCACTTGAAGCCGAGTGGAATGCTAAGTTTGCTGAATATGAGAAGAAATACAAGGAGGAAGCTGCAGAGCTAAAGTCTATCATTACTGGTGAATTACCTGCTGGTTGGGACAAAGCACTTCCGACATACACTCCAGAAAGCCCTGCTGATGCTACAAGAAATCTGTCTCAACTTGGGCCTGCTGATCGTTTCCTGAAAGCCCTGGTTGACATTCCGTTTGCGTTTAAGCGGATGGAAGCACTGCTTTTCATGGGTACATTTAAAGAGGATCTCACTATTACTATGGAGTCTTTTGCAGTTTTAGAGGTTGCTTGCAAGGAGCTAAGAAGCAACCGTTTATTCCTCAAGCTTCTTGAAGCTGTTCTGAAAACCGGAAACCGTATGAATTATGGATTATGA 1305 0.4544 MKLCKADVSTVCLGLAASVGAFILAAGSKGKGYSSSSRRRFGSSSNTNTVRATAVETLDKTAEVSLVEKSINTIRFLSIDAVEKANSGHPGLPMGTPGHPENFETLGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDNEIVDHYTYVILGDGCQMEGISNEASSLAGHWGLGKLIAFYDDNHISIDGDTDIAFTENVDERFEALGWHVIWVKNGNTGYDDIRAAIKEAKAVKDKPTLIKVTTTIGYGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVPDGAALEAEWNAKFAEYEKKYKEEAAELKSIITGELPAGWDKALPTYTPESPADATRNLSQLGPADRFLKALVDIPFAFKRMEALLFMGTFKEDLTITMESFAVLEVACKELRSNRLFLKLLEAVLKTGNRMNYGL* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02019 434 ProSiteProfiles Formin homology-2 (FH2) domain profile. 194 434 IPR015425 -
Rops5g02019 434 Pfam Clp protease 1 36 IPR023562 -
Rops5g02019 434 MobiDBLite consensus disorder prediction 30 47 - -
Rops5g02019 434 Gene3D Formin, FH2 domain 323 433 IPR042201 -
Rops5g02019 434 Pfam Transketolase, thiamine diphosphate binding domain 69 95 IPR005474 -
Rops5g02019 434 Pfam Transketolase, thiamine diphosphate binding domain 96 335 IPR005474 -
Rops5g02019 434 Gene3D - 1 78 - -
Rops5g02019 434 SUPERFAMILY Formin homology 2 domain (FH2 domain) 351 433 - -
Rops5g02019 434 Gene3D - 95 322 - -
Rops5g02019 434 PANTHER TRANSKETOLASE 96 359 IPR033247 -
Rops5g02019 434 Pfam Formin Homology 2 Domain 352 433 IPR015425 -
Rops5g02019 434 CDD TPP_TK 72 274 IPR005474 -
Rops5g02019 434 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 67 329 IPR029061 -
Rops5g02019 434 Coils Coil 305 325 - -
Rops5g02019 434 SUPERFAMILY ClpP/crotonase 1 35 IPR029045 -
Rops5g02019 434 MobiDBLite consensus disorder prediction 28 47 - -
Rops5g02019 434 ProSitePatterns Transketolase signature 1. 75 95 IPR005474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02019 Rops-Chr5 42695941 42697565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02019 333 433 FH2 protein (formin) Gene Family AT5G54650 58.879 1.38e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02019 K00615 - mnt:21408272 514.998