Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02009 ATGATGAATCCCTTCACCTCGTCACCATCATCATCATCATCATCATCCAAGACCAAAAAGAAGCAAACCATGGCAACACAAGAACAACAACAACAACATGAAACTGCATGGGGAGGGAGGTACCTTGGTGTGAGAAGAAGGCCATGGGGAAGATATGCTGCTGAAATTCGAGACCCTTCCACCAAGGAAAGGCATTGGTTGGGAACGTTCGATACCGCGGAAGAGGCCGCCGTGGCATACGACAGGGCGGCCCGTTCCATGCGCGGATCACGTGCCCGAACCAACTTCGTTTACCCAGACACTCCGCCGGGTTCCTCTGTCACCTCCATCATCTCCCCTGATGAACAAACCCAAACCCAAATTCAGTACCCTCAAGAACTCTCCTTCTTTGACCCAAATTCGTTTACCCAACAACCCGACCCGAATTCTCACTTCGCGATTTCCGGGTACCCGGGAATGACCGATATTACCACGTGGGCAGCGGCGGAAGTGGCATCATCTGGAGGAAGCACCACCGTGGAGGGCTCACATTTTCATCAGATGCATGATGATAGTGACACACAACTTCCACCATTGCCACCGGATATTACAAGCTCCATGGGTTATGACATGGGTAATGGGTTTTATGGAGATGGTGTCGTGTATTCGGATCCGGGTTCCGAAGTAAACGCAAGTGGGTCGGGTTACCCGTATTTGGGGTTTGAGTCCAGTGAATATATGCATAGTCCATTTTTCAGCACCATGCCATCGGTGTCAGATAATGTGGCAACAGACACTAATGGTTTTAATTTGGGTAGCTCTTCTTATTTCAACTAA 816 0.4963 MMNPFTSSPSSSSSSSKTKKKQTMATQEQQQQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDRAARSMRGSRARTNFVYPDTPPGSSVTSIISPDEQTQTQIQYPQELSFFDPNSFTQQPDPNSHFAISGYPGMTDITTWAAAEVASSGGSTTVEGSHFHQMHDDSDTQLPPLPPDITSSMGYDMGNGFYGDGVVYSDPGSEVNASGSGYPYLGFESSEYMHSPFFSTMPSVSDNVATDTNGFNLGSSSYFN* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02009 271 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Rops5g02009 271 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Rops5g02009 271 Pfam AP2 domain 41 89 IPR001471 GO:0003700|GO:0006355
Rops5g02009 271 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Rops5g02009 271 MobiDBLite consensus disorder prediction 1 36 - -
Rops5g02009 271 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 160 - -
Rops5g02009 271 FunFam Ethylene-responsive transcription factor 2 40 98 - -
Rops5g02009 271 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Rops5g02009 271 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Rops5g02009 271 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Rops5g02009 271 CDD AP2 40 96 IPR001471 GO:0003700|GO:0006355
Rops5g02009 271 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02009 Rops-Chr5 42471921 42472736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02009 12 262 AP2-EREBP Transcription Factor Family AT5G13910 44.615 4.92e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops5g02009 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02009 K09286 - gmx:100809600 342.043