Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02002 ATGGCTGATTCTGACACCAATCACGATGACTCATCAAAGATTTCATCTCTTGCAACTGAAGGAGATGCTCCTAATGATGCAGGAAATGATGTCAAGTTGAGTTCTACGGACCAAAGAGAGGCTCTACCTGGTGAGCCCAAGTGTATTATATGTGGCCGTTATGGTGAGTATATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAATGCAAACAATCACTGCTATGCAGAATTGCCAAATCCTCATCTCCTGTTAGAGGTCTTCCATCACCTAAAAAGCTACCTGCAGCTGATGAGTGCTTTTATGTTAGAGATAATGATTACCAATCAGGAAGTCCTTCTTTAGGTGGTGACCAGGCTGAACTGCTTAGAAAGAAACTTGACATTCATGTGAAAGGTGATGTAGTGGCACCAGTTTTGTCATTTACTTCCTGTAACCTCCCTGACAAACTCCTTCACAATATAGAGGCAGCAGGATATGACATGCCTACATCTGTCCAAATGCAAGCAATCCCTGCTGCTTTGATGGGAAAAAACATGCTTGTATTGGCTGAAACAGGATCTGGAAAGTCAGCTTCATTTCTGATTCCGATAGTTTCTAGCTGTGTGAGACATCGTTTGACATTTGCTTCAGATAAGAAAAATCCTTTAGCTTTGGTATTAACACCTACCAGAGAGCTCTGTATACAGGTTGAAGAGCATGCTAAATTGCTTGGAAAGGGGTTGCCTTTTAAAACTGCACTTGTGGTTGGTGGTGATGCCATGGCTGGACAACTCTACCGCATTCAACAAGGAGTGGAATTGATTGTGGGAACACCAGGAAGGCTTGTTGATCTTTTAATAAAGCATGAGATTGACTTAGATGATGTGATGACTTTTGTTGTGGATGAGGTGGACTGCATGCTACAAAGGGGTTTTCGAGATCAAGTCTTACAGATATATAGGGCTTTGTCTCAAACTCAGGTCTTGATGTATTCTGCAACAATGTCTAATGATTTAGAGAAATTGGCAAACTCTTTGGCAAAAGGTATGGTGGTTATCTCTGTTGGGGAACCTAATAAACCAAATCAGGCTGTGAAGCAGCTAGCTATTTGGGTTGAGTCAAAGCAGAAGAAGCAAAAGCTTTTTGACATTTTGGCGAGTAAGAAACATTTCCAGCCACCAGTCGTGATATATGTGGGCTCCAAGTTTGGCGCAGATCTCTTGGCAAATGCAATTACTGTTACCACAGGGATTAAAGCAGTTTCAATTCATGGGGAGAAATCTATGAAGGAAAGGAGAGAAATAATGCTGTCCTTTTTGGTGGGTGAGGTCCCAGTGGTGGTGGCTACTGGAGTTTTGGGCAGGGGGGTTGATCTATTGAGTGTAAGACAGGTAATTGTATTTGACATGCCTAATTCCATTAAGGAGTATGTACATCAGATTGGAAGGGCATCCAGAATGGGAGAGGAAGGTCAAGCTGTAGTTTTCGTGAATGAGGAGAATAAGAATGTTTTTGCAGATCTAGTTGATGTTCTAAAATCTAGTGGAGCAGCTGTACCTCGGGAGCTTGTCAATTCACGGTACACTACAGGATTTTTCTCTGGTGGCAAAGGTTCAAAGAAGAGAAAGCATAGATGCCCAGAGGTCAAAGAGTCACAGCCTCAGAAGGAAAGTAGCAGAAAATGA 1671 0.4219 MADSDTNHDDSSKISSLATEGDAPNDAGNDVKLSSTDQREALPGEPKCIICGRYGEYICDETDDDVCSLECKQSLLCRIAKSSSPVRGLPSPKKLPAADECFYVRDNDYQSGSPSLGGDQAELLRKKLDIHVKGDVVAPVLSFTSCNLPDKLLHNIEAAGYDMPTSVQMQAIPAALMGKNMLVLAETGSGKSASFLIPIVSSCVRHRLTFASDKKNPLALVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMAGQLYRIQQGVELIVGTPGRLVDLLIKHEIDLDDVMTFVVDEVDCMLQRGFRDQVLQIYRALSQTQVLMYSATMSNDLEKLANSLAKGMVVISVGEPNKPNQAVKQLAIWVESKQKKQKLFDILASKKHFQPPVVIYVGSKFGADLLANAITVTTGIKAVSIHGEKSMKERREIMLSFLVGEVPVVVATGVLGRGVDLLSVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAVVFVNEENKNVFADLVDVLKSSGAAVPRELVNSRYTTGFFSGGKGSKKRKHRCPEVKESQPQKESSRK* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02002 556 MobiDBLite consensus disorder prediction 529 556 - -
Rops5g02002 556 CDD SF2_C_DEAD 360 492 - -
Rops5g02002 556 MobiDBLite consensus disorder prediction 540 556 - -
Rops5g02002 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 348 IPR014001 -
Rops5g02002 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 350 IPR027417 -
Rops5g02002 556 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Rops5g02002 556 SMART helicmild6 401 483 IPR001650 -
Rops5g02002 556 FunFam DEAD-box ATP-dependent RNA helicase 41 28 85 - -
Rops5g02002 556 Pfam Helicase conserved C-terminal domain 372 483 IPR001650 -
Rops5g02002 556 Gene3D - 115 350 IPR027417 -
Rops5g02002 556 MobiDBLite consensus disorder prediction 1 38 - -
Rops5g02002 556 Gene3D - 351 524 IPR027417 -
Rops5g02002 556 Pfam HIT zinc finger 46 72 IPR007529 -
Rops5g02002 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 522 IPR001650 -
Rops5g02002 556 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 137 521 - -
Rops5g02002 556 Gene3D - 27 84 - -
Rops5g02002 556 SMART ultradead3 160 363 IPR014001 -
Rops5g02002 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 497 IPR027417 -
Rops5g02002 556 Pfam DEAD/DEAH box helicase 165 337 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02002 Rops-Chr5 42304982 42310021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02002 135 503 Eukaryotic Initiation Factors Gene Family AT3G19760 27.807 2.08e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02002 K19466 - gmx:100784491 867.455