Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01993 ATGGGAACTTCTAACCAAGATACTTCTCCTCCTATTCTTCAAGACCTAAAGGTGACCATCCACCAATCCTCCATGGTTTTTCCATCCAAAGAAACTGAGAGAAAGTCCTTGTTCTTGTCAAACATAGACCAAGTCCTCAACTTTGATGTAGAGACGGTTCACTTCTTTGGTGCCCACAAAGATTTTCCCCCCCAAATTGTGATCGAGATGTTCAAGAATGCCCTAGCTGATGCCCTAGTGGCTTATGACTTCTTTGCAGGAAGATTGAAGCTGAACCCTGAAACCAAAAGGTTAGAGATGGATTGCAACGCAGAGGGAGCAGGGTTTGTGGTGGCTTTTAGCGAGTACAGATTGGATCAGATAGGGGACTTGGATTATCCGAATCCAGCTTTTGCACAATTGGTTCATAAGAATAAGGATTTTCTTAAACAAGGTGATGAACCATTATGTGTTGCTCAGTTGACATCCTTCAAGTGTGGTGGCTTTGCAATTGGCTTCTCAACCAGCCATACAACCTTTGATGGACTTAGCTTCAAAACCTTCTTGGACAACTTGGCTGCATTGGCTGCTAAAAAGCCCTTGGTTGTCACACCCTGCCATGACAGACACCTTCTAGCCGCTCGATCTCCGCCACATGTCAAATTCCCTCACCCTGAGATGCTCAAATTAGATGGTAACCTTGAGTCTAGCATATTTGATGCCACCTCTGAGCAACTTGACTTCAAGGTTTTCAAACTAACCTCTAATGACATTGCTAAGTTGAAGGCAAAGGCTATGGCTTCTAGTAATAGTGGTAGCATTATTAATTTCTCTTCAAAACGTGTCACTGGTTTTAATGTCATCACTGCACATTTATGGAGGTGCAAAGCACTATCTGGAGATGATGATCCCAATAGGTCATCAACTATACTCTTTGCTGTGGATATACGCTCAAGGTTGAACCCTCCATTGTCAAAATCATTCACTGGGAATGCAGTGTTAACTGCATATGCCACAGGAAAGTGTAAGGAATTAGAAGAATGGCCATTCTTAAGATTGATTGAAATTGTTTCTGAGGGTGCTACTAGGATGACAGATGAGTATGCAAGATCTATCATAGATTGGGGAGAGGCGAACAAAGGGTTTCCAAATGGGGAGGTGTTGGTGTCTTCTTGGTGGAGATTAGGGTTTGAAGAGGTGGAGTATCCATGGGGGAAGCCAAAGTATTGTTGCCCTGTGGTGTATCATAGGAAGGATATTATTTTGTTGTTTCCTCCTATAGATGGAGGTGATGGGGTGAGTATTATTGTTTCACTTCCTCCTAAGGAAATGGAAAAATTTCATAGTCTCTTCAACAAGTTCTTGGTTTGA 1350 0.4259 MGTSNQDTSPPILQDLKVTIHQSSMVFPSKETERKSLFLSNIDQVLNFDVETVHFFGAHKDFPPQIVIEMFKNALADALVAYDFFAGRLKLNPETKRLEMDCNAEGAGFVVAFSEYRLDQIGDLDYPNPAFAQLVHKNKDFLKQGDEPLCVAQLTSFKCGGFAIGFSTSHTTFDGLSFKTFLDNLAALAAKKPLVVTPCHDRHLLAARSPPHVKFPHPEMLKLDGNLESSIFDATSEQLDFKVFKLTSNDIAKLKAKAMASSNSGSIINFSSKRVTGFNVITAHLWRCKALSGDDDPNRSSTILFAVDIRSRLNPPLSKSFTGNAVLTAYATGKCKELEEWPFLRLIEIVSEGATRMTDEYARSIIDWGEANKGFPNGEVLVSSWWRLGFEEVEYPWGKPKYCCPVVYHRKDIILLFPPIDGGDGVSIIVSLPPKEMEKFHSLFNKFLV* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01993 449 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 23 442 - -
Rops5g01993 449 Gene3D - 12 221 IPR023213 -
Rops5g01993 449 Gene3D - 229 447 IPR023213 -
Rops5g01993 449 Pfam Transferase family 16 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01993 Rops-Chr5 42067984 42071767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01993 16 448 Monolignol Biosynthesis Gene Families AT5G48930 31.223 4.14e-52 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01993 K13065 - gmx:100305576 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02449 8 56403518 56407481 Rops5g01993 5 42067984 42071767 PCT