Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops5g01988 | ATGAAAGATGAAGTTGATTTAGAAGCTGGTCTTCCTCGACACAATGTAGAACTAACCTCTTCCACTACCCAATTGAACACTGACATGGGTCTCTTCTTGGAAGAGGCAGAGAAAGTGAGAACAGAAATGGGTCATCTTCGTGAAATATTGGGTAGACTTCAACAAGCCAATGAAGAAAGCAAGTCCCTTCACAAACCAGAAGCACTGAAAGCATTAAGGAACAAAATCAACACCGAAATTGTCACATTGTTGAAAAAAGCAAGGGAGATAAGGACACAGCTTGAAGAAATGGATCGTGCAAATGCAGCTAATAGGAGACTCTCTGGGCTAAAAGATGGCACCCCAGCAATTTATAGAACAAGAATTGCTGTCACAAATGGGTTGAGGAAGAAGCTAAAGGAGCTTATGATGGAGTTTCAGGGTTTAAGGCAAAGGATGATGAGTGAGTATAAAGATACTGTTGGGAGAAGGTATTTCACTGTGACTGGTGAACACCCAGATGAAGAGGTTATTGAGAAGATCATTTCTAATGGTGATGATGAGGAGTTTTTGGGAAAGGCTATAAAGGAACATGGAAGGGGGAAGGTTCTGGAAACTGTGGTGGAGATTCAGGATAGGCATGATGCTGCTAAAGAGGTTGAGAAGAGTTTGTTGGAGCTGCATCAAGTGTTTTTGGATATGGCTGTGATGGTTGAGGCACAAGGTGAGAAAATGGATGATATTGAACATCATGTGCTTCATGCTTCTCATTATGTTAAGGATGGGACTAAGAACCTTCAGAGTGCAAAGCAGTATCAGAGGAGTAGCAGGAAGTGGATGTGCATTGGAATCATAATTCTGTTGATTTTGATTCTTGTTATTGTCATCCCCATTGCCACCAGTTTCAGCAGTTCTTGA | 897 | 0.4158 | MKDEVDLEAGLPRHNVELTSSTTQLNTDMGLFLEEAEKVRTEMGHLREILGRLQQANEESKSLHKPEALKALRNKINTEIVTLLKKAREIRTQLEEMDRANAANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKDTVGRRYFTVTGEHPDEEVIEKIISNGDDEEFLGKAIKEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQSAKQYQRSSRKWMCIGIIILLILILVIVIPIATSFSSS* | 299 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops5g01988 | 298 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 200 | 262 | IPR000727 | - | |
| Rops5g01988 | 298 | Coils | Coil | 125 | 145 | - | - | |
| Rops5g01988 | 298 | SMART | SynN_4 | 24 | 151 | IPR006011 | GO:0016020 | |
| Rops5g01988 | 298 | Pfam | SNARE domain | 237 | 288 | IPR000727 | - | |
| Rops5g01988 | 298 | CDD | SynN | 29 | 187 | IPR006011 | GO:0016020 | |
| Rops5g01988 | 298 | Pfam | Syntaxin | 32 | 235 | IPR006011 | GO:0016020 | |
| Rops5g01988 | 298 | Gene3D | - | 196 | 296 | - | - | |
| Rops5g01988 | 298 | Gene3D | - | 29 | 157 | - | - | |
| Rops5g01988 | 298 | Coils | Coil | 80 | 100 | - | - | |
| Rops5g01988 | 298 | SUPERFAMILY | t-snare proteins | 28 | 255 | IPR010989 | GO:0016020|GO:0016192 | |
| Rops5g01988 | 298 | SMART | tSNARE_6 | 195 | 262 | IPR000727 | - | |
| Rops5g01988 | 298 | FunFam | Syntaxin 132 | 193 | 293 | - | - | |
| Rops5g01988 | 298 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 26 | 157 | - | - | |
| Rops5g01988 | 298 | PANTHER | SYNTAXIN | 46 | 282 | IPR045242 | - | |
| Rops5g01988 | 298 | ProSitePatterns | Syntaxin / epimorphin family signature. | 206 | 246 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Rops5g01988 | 298 | CDD | SNARE_syntaxin1-like | 199 | 260 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops5g01988 | Rops-Chr5 | 41934105 | 41935422 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops5g01988 | 6 | 298 | SNARE and Associated Proteins | AT1G08560 | 66.102 | 6.45e-127 | 362 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops5g01988 | K08486 | - | gmx:100816016 | 497.278 |