Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01984 ATGGGAACCCCACAATCTAATAACTTGCCACCAGGATTTAGGTTCCACCCAACAGATGAGGAGCTCATTCTTCACTATCTAAGGAAGAAGGTGGCTTCTATACCCTTGCCAGTCTCCATCATTGCAGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGCAAAGGCTGCGTTTGGGGAGAAAGAATGGTACTTTTTCAGCCCCAGAGACCGCAAGTACCCAAATGGAGCCAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCCACTGGCACTGACAAGAACATAGTGGCATCATCACCAGGAGGAAGAGTGAGAGAGATCTTTGGGGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAGACCCCCAAAGGGCGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTGGACAATAATAGACCCATTAAGCTCAAATACACCTCCATGAGGTTGGATGACTGGGTTCTGTGCCGGATATACAAGAAGTTCAAGTACACTTTATCTTCAACCACAGAGGCAGCATCAGTGCTAGTGAATGAGCAAGTTCAAGCAGAAGTGCAGCTATTCAAAGACACGCTTTTACCAATTTCTAGGAGTCCTATCCCTCTTCCTCAGAACACACTGATATCTCAGAAATCTTTATCCTTCTCCAACCTCTTGGATGCCAATGACTTCTCCATGCTGAGCAACTTCTTATCTGAGAACCATTCCAACACCCCACCTCAAAGTTCAGGCTTTAATTGTGGGAATCTGAATCAGGAGTCACCCCAAAACCACACCAACATCACCACCACCACAAATAGCTTCTTGTTTCAGAAGAACCCTCAACCAAACCCTTCAGTCCCTTATTATATGGAAAACATCAGGTCCAAACACCAGTTTTCAAACATAGATGAGGACATACAATACCCATCAAAGAAATACCTGAGCTCCTCTTGCAATTTCCCTAACGCCAACATCAAAAGTGAGAACCCACAATGGAACTTCCTCTTGAAGCAATCATTCATGAACCACCAGTTACTTTTGGGTCCTCATCTTCAATTCCAGGGATAA 1068 0.4513 MGTPQSNNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASSPGGRVREIFGVKKALVFYKGRPPKGVKTNWIMHEYRLVDNNRPIKLKYTSMRLDDWVLCRIYKKFKYTLSSTTEAASVLVNEQVQAEVQLFKDTLLPISRSPIPLPQNTLISQKSLSFSNLLDANDFSMLSNFLSENHSNTPPQSSGFNCGNLNQESPQNHTNITTTTNSFLFQKNPQPNPSVPYYMENIRSKHQFSNIDEDIQYPSKKYLSSSCNFPNANIKSENPQWNFLLKQSFMNHQLLLGPHLQFQG* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01984 355 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 265 - -
Rops5g01984 355 SUPERFAMILY NAC domain 6 167 IPR036093 GO:0003677|GO:0006355
Rops5g01984 355 MobiDBLite consensus disorder prediction 241 267 - -
Rops5g01984 355 Gene3D NAC domain 18 171 IPR036093 GO:0003677|GO:0006355
Rops5g01984 355 ProSiteProfiles NAC domain profile. 9 167 IPR003441 GO:0003677|GO:0006355
Rops5g01984 355 Pfam No apical meristem (NAM) protein 10 140 IPR003441 GO:0003677|GO:0006355
Rops5g01984 355 FunFam NAC transcription factor 56 18 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01984 Rops-Chr5 41854677 41857012 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01984 7 355 NAC Transcription Factor Family AT3G04070 50.847 4.42e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops5g01984 NAM 3.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01984 - - gmx:100170708 518.85