Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01981 ATGGAAGAACCAATTGTGGTGAACAAAGGAGATGAGCCTTTGGATTTGCCTCCAGGTTTCAGGTTCCACCCAACAGATGATGAGATCATCATTTATTATCTGACAGAGAAGGTGTTGAATAGCAGTTTCAGTGCAACTGCTATTGGTGAAGCTGATTTGAACAAGTGTGAACCTTGGGACTTACCGAAGAAAGCCAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCAGAAAGGATAGGAAGTATCCAACAGGCACAAGAACTAATAGAGCAACTCAATCTGGGTACTGGAAGGCCACTGGAAAAGATAAGGAGATTTACAAAGGGAAAAGCAATGAACTTGTGGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAGGGGAGAGAAAACCAATTGGGTTATCCATGAATTCAGGTTGGAAGGCAAATTTGCGCATTACAACCTCCCGCAGGTTGCAAAGGATGAATGGGTTGTCTCCAGGGTTTTTCACAAGAATACAGATGTTAGAAAGACCCCAATTCCTGGTATTTTGAGGATAAACTCAATCTCAGATGATCTATTTGATTTTTCTTCACTCCCACCTCTTATTGAACCTCCTTATGGCCACACCACAAACAAGCCTTCAGGTTACATTGATGATGACTTCAAGGGTACCAACCCACCTTCATCATCATCAGCTAAATCACCATCAGATGGCTACAATCTTCCCAGCTTCTTGATCAACAACAATCAACACCAGATGCTGATCAAGCCAGAAAACCACACAACCTATGATATTCCCACCACCAACCAAGGGAATTTCAGTAGCCCAATGGGAAACTTCCTTTCTCAACCTCAAATCCAAATTCAAAACACAAGCTCCCAAATTCAGAAGAACAATGTCTCAGATTCTTATCATATGCACCAAGGCAATAACAATTACATTTTTGGATCGGACAAACAGTGCAAGATGGAGAAGTTCTCTACCAACAATCCTGTTGTCAGTGTCTCACAGGAAACTTGCCTCAGCAATGACAGAAACACTGACACATCCTCAGTGGTTTCAAAACTAGACATCATGGGAAGGAATAGAACATTGTATGAGGATCTTGTGGGTCCATCATCAGTTGGTCCCCTCTCAGATTTGGAATGCCTGTGGGATGACTATTGA 1161 0.4255 MEEPIVVNKGDEPLDLPPGFRFHPTDDEIIIYYLTEKVLNSSFSATAIGEADLNKCEPWDLPKKAKMGEKDWYFFCRKDRKYPTGTRTNRATQSGYWKATGKDKEIYKGKSNELVGMKKTLVFYRGRAPRGEKTNWVIHEFRLEGKFAHYNLPQVAKDEWVVSRVFHKNTDVRKTPIPGILRINSISDDLFDFSSLPPLIEPPYGHTTNKPSGYIDDDFKGTNPPSSSSAKSPSDGYNLPSFLINNNQHQMLIKPENHTTYDIPTTNQGNFSSPMGNFLSQPQIQIQNTSSQIQKNNVSDSYHMHQGNNNYIFGSDKQCKMEKFSTNNPVVSVSQETCLSNDRNTDTSSVVSKLDIMGRNRTLYEDLVGPSSVGPLSDLECLWDDY* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01981 386 FunFam NAC domain-containing protein 100-like 25 172 - -
Rops5g01981 386 MobiDBLite consensus disorder prediction 221 239 - -
Rops5g01981 386 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Rops5g01981 386 MobiDBLite consensus disorder prediction 202 239 - -
Rops5g01981 386 Gene3D NAC domain 25 173 IPR036093 GO:0003677|GO:0006355
Rops5g01981 386 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
Rops5g01981 386 SUPERFAMILY NAC domain 14 169 IPR036093 GO:0003677|GO:0006355
Rops5g01981 386 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01981 Rops-Chr5 41770004 41772072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01981 1 384 NAC Transcription Factor Family AT5G18270 49.747 1.70e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops5g01981 NAM 1.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01981 - - aprc:113861501 548.895