Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01976 ATGCCTCCATTTGTCAGTGGGACAAAAACATATGCAGGGCTAGTTGTTTGGACTAGTAGTAATCAACAGATAATGTACTATCATCAGCAGCAACAAGCTAAGAACATCCACGCTTTAAGGATGCACAGAGGTGGCAATGGGACTGGAGATTCAGGACTTGTTCTCTCAACTGATGCTAAGCCTAGACTAAAATGGACACCTGATCTTCATGAAAGGTTTATAGAAGCAGTCAATCAACTTGGAGGAGCAGATAAAGCTACACCAAAAACGGTATTGAAACTTATGGGGATTCCTGGACTGACTCTATACCACTTAAAGAGTCACCTACAGAAGTACAGGATCAGTAAAAATATGCATGGACAAACCAATACCGGTAACAATAAAATAGCATCAAACATAGAAGCAGCAGGCAGAATGTCAGAAGAAAGTGGAATTCAAATGAAACATTTAAGCATAGGAGGACTCCAGACAAACAAAAATTCAGAAATAAATGAGGCATTACAGATGCAAATTGAAGTCCAAAGAAGACTACATGAGCAGCTTGAGCAGGTACAGCGACACTTACAGCTAAGGATAGAAGCTCAAGGGAAGTACCTTCATGCAGTGTTGGAAAAAGCTAGGGAGACACTAGGAAAACAAAATTTAGGTACCATGGGACTTGATGCTGCAAAGGTTCCACTGCCTGAACTAGCATCCAGAGTATCCACTCAATGCCTTGATTCTAAATTTTCAGAACTGAAAGAATTGCAGGAATTGTGGCCTCAGAAAACACAAGAAGGTGAAGCCATTGACTGTTCAAGGGGAGGTTTCTTAACCTACAGTGAGGAATCTGAAAGAGACCAAGAAACACATCACAAGGGCCTGAATTTTAGAGCATATAATGGAACTCCATTTTTAGTTTCAAAAGAGTGTGTGGAAGAGTCTATGCTTCTGAAGTCTGATCTTGCATGGAGTGAAGAAGTGAAGGAGAATTTGATGTTTCTTTCCTCATCAAATGATAAAGTAATAAAGGGGAATTTTTTACCAGAACGGACCTCAAGCCTCTTATCCATGAATATAGGGGCTCAAGAAGAAGAAAATTTTGGGAGAACAAGTGTTTCAAAGGAAGATTTAAAGGGTGAAGGTGTCAAACTGAACCAAGAGAAAGTTTCTCAAGATTATAGACTGGCTAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCAGTGTCAACAGTTTGACTTGAATGGTTTCAGCTGGAATTGCTAG 1269 0.4003 MPPFVSGTKTYAGLVVWTSSNQQIMYYHQQQQAKNIHALRMHRGGNGTGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTGNNKIASNIEAAGRMSEESGIQMKHLSIGGLQTNKNSEINEALQMQIEVQRRLHEQLEQVQRHLQLRIEAQGKYLHAVLEKARETLGKQNLGTMGLDAAKVPLPELASRVSTQCLDSKFSELKELQELWPQKTQEGEAIDCSRGGFLTYSEESERDQETHHKGLNFRAYNGTPFLVSKECVEESMLLKSDLAWSEEVKENLMFLSSSNDKVIKGNFLPERTSSLLSMNIGAQEEENFGRTSVSKEDLKGEGVKLNQEKVSQDYRLANFEVKLDLNSHDDNDASSQCQQFDLNGFSWNC* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01976 422 Gene3D - 59 117 - -
Rops5g01976 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 117 IPR017930 -
Rops5g01976 422 SUPERFAMILY Homeodomain-like 59 115 IPR009057 -
Rops5g01976 422 Pfam MYB-CC type transfactor, LHEQLE motif 162 208 IPR025756 -
Rops5g01976 422 Coils Coil 164 184 - -
Rops5g01976 422 Pfam Myb-like DNA-binding domain 62 113 IPR001005 -
Rops5g01976 422 FunFam Myb family transcription factor 59 117 - -
Rops5g01976 422 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 28 284 IPR044848 GO:0003700
Rops5g01976 422 NCBIfam myb-like DNA-binding domain, SHAQKYF class 60 115 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01976 Rops-Chr5 41691621 41694745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01976 92 421 G2-like Transcription Factor Family AT3G04030 46.828 4.48e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops5g01976 Myb_DNA-binding 5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01976 - - gmx:100786282 635.18