Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01972 ATGGAGAATAATATGGAGGGTGTGCACTGGTGCAACATATGCTCTAAGATGGTGAATCCAATGACAGAAGCTCAGAACAAATGTCCATTCTGTGAGACAGAATTTACTGAGGCAATGGACAACCTAAGGGACCAGAATGATGCTATTGATTTAAGGTCAGCTTGGGTGTTCTCACTTTATGCTCCAATTTTTCTTGGCTTGATGGGTGCCTTAAGCCCTTCTCTTGCAAGCACTGCTGCACAAGAAAGCAGCAGCATCTCCAGAAGGGAGGAAGAGGTTGAACAAGAGAGGGAAAATGAACTTGTACTTGGGAGAAGGAGAAGAACCTCAACTTATATGATGCATCTCTTCCGGGGTCTTCATGTTAGGATGGTGTCTGAATCTGAGAACACAGAAGGCAATAGGAACATAGATAGCAGTATACTTGTCATTGATCCAATCAATGAAGGTGCCTTGATTGTAAGAGGTCCTAATTTGAACCACACAAGTAGTCCAAATGAGAACACTGTTGGCTCCTTAAATGATATTGTGGGAGGAACTGGCTTTGATTTGTTGCTACAGCATTTGGCACAGATTGGCCCCAGTGGATATGCAAGTGTAAACCCTCCAGCACAGCAAGCAGCAATTGATGCATTGCCTAGTGTGACTAATGAGGAAAAGTTGCAATGCACAATATGTTTGGAGGATCTTGAGATTGGGATTGAAGCCAAGGAGATGCCATGTAAGCATAAATTCCACAGTGATTGCATTATCTCATGGCTAAAACTCCATAGTTCTTGTCCAGTTTGCAGGTTTCAGATGCCATCTGAGGATTTAACTGTTGAAGCCAATTTGGGAATTGGAAATAGGGACAATCAGAATAATGAGCTAGTCAGAGCTAGAGAAGAGAGAACTAGAAATGGAAGGAGGATCTGGTTTCCAGTACTTCAGTCATTTAATAATTTTCTTCCTTCTCCTTGA 960 0.4229 MENNMEGVHWCNICSKMVNPMTEAQNKCPFCETEFTEAMDNLRDQNDAIDLRSAWVFSLYAPIFLGLMGALSPSLASTAAQESSSISRREEEVEQERENELVLGRRRRTSTYMMHLFRGLHVRMVSESENTEGNRNIDSSILVIDPINEGALIVRGPNLNHTSSPNENTVGSLNDIVGGTGFDLLLQHLAQIGPSGYASVNPPAQQAAIDALPSVTNEEKLQCTICLEDLEIGIEAKEMPCKHKFHSDCIISWLKLHSSCPVCRFQMPSEDLTVEANLGIGNRDNQNNELVRAREERTRNGRRIWFPVLQSFNNFLPSP* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01972 319 FunFam E3 ubiquitin-protein ligase RNF181 194 270 - -
Rops5g01972 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 270 IPR013083 -
Rops5g01972 319 Pfam Ring finger domain 222 264 IPR001841 -
Rops5g01972 319 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Rops5g01972 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 83 268 - -
Rops5g01972 319 SMART ring_2 223 263 IPR001841 -
Rops5g01972 319 SUPERFAMILY RING/U-box 212 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01972 Rops-Chr5 41668077 41669617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01972 90 304 C3H Transcription Factor Family AT1G26800 31.364 1.07e-22 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01972 - K11982 gmx:100790855 521.931