Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01970 ATGCTTAGCCTGAGCGAAGGCGTCGAAGATCATAATGGGGTGAGCCACCGAGAAAACAAACGCCTCGACGACGGAGAGTGGGGTGAGGAGGAGGTCCAACGCCGATGGGGATATTTCGTGGAGCAGCTTTTATCTGCCGACAAAAGCTCATTCCATAAAGAGAGCACTGAGACCTTGTTGAGTTGTGAACTTAGCTGTGTTTTTTTTCTCCTCTTTCTTCTTCTGAGTTCCAATCTCTTGCTGATGGACATGGATGTTTGCCGGAATGTTTCAGTTTCCAGTGAGTTTCAGCAAGAGCTTTCTGCCCTTGATGACCTTTTCTCTGCTCAGAACACGGAAGTGGACTTTGGCATGGAATGGTTGTCGGTCTTTGTGGAAGATTGTTTTTCCAGTAAGCCAAGTTGTCTCTTAGCACCTGCAAGTGTTCAAACTACCAGCACCAAACCTTCAAGCACAATACATAGACCCCAGCAAAATAAGTTTTCTTTGCAAAATTTTGCTGTGCCTGGGAAGGCTAGAAGCAAGAGGAAAAGGCTTTCAGCTCCTAGAACCAAAGACACTTTAAGTACTTGGTCACACCATTTAATAAGTTCACAAAGTGATAGCTTGAGTTCAGACCCTCCTTTGCTGAAACAGGCTTATTGGTTAGCTGATAGTGAACTAATTGTCCCTAAAAGGAAGGATGAGCAAGAAGTGGTAGCAGCCAAAGGTGAAGGGGAAGTGGTGGAAGAGGGGGTTGTGAGCAAGGAGAGCTTGGAGGATTCTGAACTTGAAATGAACAACAATGGGCAGCATCCAATTCCAAGGAGGTGCACCCATTGTTTGGCTCAGAGGACCCCACAATGGAGAGCTGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAGTCTGGTAGGTTGCTGCCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTGAGCTACTTGCATTCCAATTCTCACAAGAAAGTTATGGAGATGAGAATGGGTGTTTTATCATCAACCATTCCTACTGAGCAGTAG 1038 0.4605 MLSLSEGVEDHNGVSHRENKRLDDGEWGEEEVQRRWGYFVEQLLSADKSSFHKESTETLLSCELSCVFFLLFLLLSSNLLLMDMDVCRNVSVSSEFQQELSALDDLFSAQNTEVDFGMEWLSVFVEDCFSSKPSCLLAPASVQTTSTKPSSTIHRPQQNKFSLQNFAVPGKARSKRKRLSAPRTKDTLSTWSHHLISSQSDSLSSDPPLLKQAYWLADSELIVPKRKDEQEVVAAKGEGEVVEEGVVSKESLEDSELEMNNNGQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMGVLSSTIPTEQ* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01970 345 PANTHER GATA TRANSCRIPTION FACTOR 101 342 - -
Rops5g01970 345 SMART GATA_3 265 319 IPR000679 GO:0006355|GO:0043565
Rops5g01970 345 Pfam GATA zinc finger 271 305 IPR000679 GO:0006355|GO:0043565
Rops5g01970 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 267 329 - -
Rops5g01970 345 ProSitePatterns GATA-type zinc finger domain. 271 296 IPR000679 GO:0006355|GO:0043565
Rops5g01970 345 Gene3D - 261 331 IPR013088 GO:0006355|GO:0008270
Rops5g01970 345 MobiDBLite consensus disorder prediction 1 22 - -
Rops5g01970 345 CDD ZnF_GATA 270 317 IPR000679 GO:0006355|GO:0043565
Rops5g01970 345 FunFam GATA transcription factor 260 342 - -
Rops5g01970 345 ProSiteProfiles GATA-type zinc finger domain profile. 269 301 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01970 Rops-Chr5 41616719 41619460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01970 118 333 C2C2-Gata Transcription Factor Family AT4G32890 41.593 9.65e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops5g01970 GATA 1.6e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01970 - - pvu:PHAVU_004G079200g 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02472 8 57023661 57025230 Rops5g01970 5 41616719 41619460 PCT