Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01966 ATGGCAAACTATGGAGGAGAAGAGTCCAGTAGTTTCGCCTATGATGTTTTCCTCAGTTTTAGAGGTGAAGACACAAGACACACATTTATAGGATATCTCCGTAAAGAGTTGTGGCGGAAGGCAATAAAAACTTTCGCTGATGATAATGATGAGGATATGAGAATAGGGGAAGGTATTTCACCTTCTCTTTCCCAAGCCATTGAAGAATCTAAGATTTATGTTGTTGTGCTTTCTGAGAATTATGCATCTTCAACCTGGTGCCTTTGGGAACTTGTCAAGATCTTAGAATGCAAGAAGGGAGACAACAAAAGACACGTTTTCCCAATTTTTTACCATGTAGATCCATCAGATGTACGGCATCAAACAAACAGTTATGGCAAAGCAATGAAAGCACATGAGAACAGGTTTGGTGAGAACTCTGAGAAAGTGCAAACATGGAAATCAGCTTTGTCTCAAATATCTAGCTTGAAAGGGCTCCATCTTGCTACCGGGTACGAAGTCAATTATATTGAAAAGATTGTTAAAACGGTCTTAGCTGAAATAGCTCCTAAAACTTTACACGTTGGTCAGGATCCAGTTGGACTTGAGCACCGCATAGAACAGGTGAAGTCACTTCTAGACATGAAGTCTAAGGATGATACTGTAAGCATGTTGGGGATATATGGACTTGGTGGAGTAGGGAAAACAGAACTTGCCAAAGCTTTGTATAACAAGATTGTGCACCAATTTGAAGCTGCAAGTTTTCTTGAGAATGTTAGAGAGAAATCTCAAAAAGTCAATAGTCTTGAAGATCTACAAGAGATACTTCTATCAGAGATGCGGGAGGAATCAGAAACCAAGTTGGGTAGCACGAGTAAAGGAATCAAAGAAATTAAATGCAAACTTGACAAGAAAAAAGTTCTTTTGGTCCTTGATGACATTGATGACAGGGAACAATTATATAACTTGGCAGGAGAATGTGATTGGTTTGGTTCAGGTAGCAGGATCATTATAACAACAAGGGACAAAGAGTTGCTTGGTTATGCAATTAACAAGGTTTATGAAATGACAGAGCTTAATGATCAGCATTCTCTTGAGCTCTTTTGTCAGAATGCCTTTGGAAAGAGCCATCCCAAAATAGGCTATGAATATATGTCTTCTCGTGCAGTATGTTATGCTAAGGGTCTTCCATTGGCTTTAAAAGTAATAGCCTCCGATTTGGCTACTCAAAAAAGTGTAGAAGCTTGGGAATGTGCATTGAAAGAGTATAAGAGAATTCCAAAATCAAGGATTCAAGACAAGCTCAAAATAAGCTACGATAGATTGGAGGACAATGCCAAGAGTCTTTTCCTAGACATAGCTTGCTTCTTCAAAGGGGAGAGAATACAATTCGTTAAAAAGATACTTCAGGAATTCAATGCAACATATAATATTGAAGTACTAGTTAATAAATCTCTTCTAACTGTTGAACATGGCTGCTTGAAGATGCATGATCTAATACAAGATATGGGTAGAGAGATTGTTAGACAGGAGGCACCAAATCCTGGCAAACGTAGCAGATTATGGTCTTATGAAGATGTTCTCGAAGTTTTGACTGAAGATTCTGGAAGTGATGCAATACAAGGGATAATGCTTGATCCCCCTCAACGAGAAGAAGTTGATTGGAGTGGTACTGCCTTTGAGAAGATGAAATACCTCAGAATTCTCATTGTTCGAAATACATCCTTTTCATCAGGGCCTATGTATCTATCAAATCATTTAAGGCTGCTAGATTGGGAGGAGTACCCTTCAAAGTCTTTCCCACCAAAATTTTATCCAAAGAAAATCATTGTCTTCAATTTGTCTTACAGCTATCTTGCACTAAAAGAACCATTTAAGAAATTTTCAAATCTAACTAGCATGGATTTCTCATGTAACCAATCTATCATTGCAATACCTGATGTGTCCGAACTTCAAGCTTTGATAAAACTAAGACTTGATCATTGTGAAAACCTAATTGAGGTCCATGAGTCTGTTGGTTTTCTCAAAAAGCTCACTCACTTAAATGCCTTCGGATGCACCAAACTTATAAATTTCCCACGAAGAATGTTTTTACCATCGTTGAAAGTCCTTCTCCTTAATTCATGTGTAAGACTTGAACACTTCCCAGAGATAGTGAACAAGATGGAAAAGTCATTGAAGATTCATATGAAAAGAACTGCTATCAAGGAGCTCCCAGATTCCATTGATAACCTTATTGGGCATGTTTGTATAAAGATATCAAAAAACAAGAAGCTCAGATATCTACCAAGCAGCTTTTTCAAGATGCAAAATGTTACTACCTTTGAGATTGGAGAGTGTACTCAACTTCTAAAATACTTTAGAAGGTTTGTACAAAATCCTTCAGCAATCAATGATCGTCCCACATTAAGAATATTGGATTTTCAAAATTGTGGTTTGTCAGATGAAGATCTTCATGTAGTTCTTAACTGTTTTCCAAAATTACAACGTTTGATTGTATCGGACAACAATTTTGTATCTCTCCCTGAATGCATTAAAGAGTTTGTTCACTTGAGATTTCTTGATATTTGTGGGTGTATGAACCTTGAACACATTTCGGAGTTACCGTCTACTATTCAGAAAGTAGACGCAACCGGTTGCTTCTCCTTAACTAGAGAGACATTAATCATGTTATGGTCTCAGCGTCACAACCTTGATTCTCAAGAGAAGGCATCAAAGATTTCTGACTCAAAATCTGCTTTGAGTGGCACTAAGATTGGACAAGAAGGCTTCAAAGGTGCTATAAAGTACGAGAAGTTGGCTGCTGTTTTGGAAGGAAAAGCTGAAGAATTATAG 2814 0.3767 MANYGGEESSSFAYDVFLSFRGEDTRHTFIGYLRKELWRKAIKTFADDNDEDMRIGEGISPSLSQAIEESKIYVVVLSENYASSTWCLWELVKILECKKGDNKRHVFPIFYHVDPSDVRHQTNSYGKAMKAHENRFGENSEKVQTWKSALSQISSLKGLHLATGYEVNYIEKIVKTVLAEIAPKTLHVGQDPVGLEHRIEQVKSLLDMKSKDDTVSMLGIYGLGGVGKTELAKALYNKIVHQFEAASFLENVREKSQKVNSLEDLQEILLSEMREESETKLGSTSKGIKEIKCKLDKKKVLLVLDDIDDREQLYNLAGECDWFGSGSRIIITTRDKELLGYAINKVYEMTELNDQHSLELFCQNAFGKSHPKIGYEYMSSRAVCYAKGLPLALKVIASDLATQKSVEAWECALKEYKRIPKSRIQDKLKISYDRLEDNAKSLFLDIACFFKGERIQFVKKILQEFNATYNIEVLVNKSLLTVEHGCLKMHDLIQDMGREIVRQEAPNPGKRSRLWSYEDVLEVLTEDSGSDAIQGIMLDPPQREEVDWSGTAFEKMKYLRILIVRNTSFSSGPMYLSNHLRLLDWEEYPSKSFPPKFYPKKIIVFNLSYSYLALKEPFKKFSNLTSMDFSCNQSIIAIPDVSELQALIKLRLDHCENLIEVHESVGFLKKLTHLNAFGCTKLINFPRRMFLPSLKVLLLNSCVRLEHFPEIVNKMEKSLKIHMKRTAIKELPDSIDNLIGHVCIKISKNKKLRYLPSSFFKMQNVTTFEIGECTQLLKYFRRFVQNPSAINDRPTLRILDFQNCGLSDEDLHVVLNCFPKLQRLIVSDNNFVSLPECIKEFVHLRFLDICGCMNLEHISELPSTIQKVDATGCFSLTRETLIMLWSQRHNLDSQEKASKISDSKSALSGTKIGQEGFKGAIKYEKLAAVLEGKAEEL* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01966 937 Gene3D - 8 179 IPR035897 -
Rops5g01966 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 446 IPR027417 -
Rops5g01966 937 Gene3D - 180 346 IPR027417 -
Rops5g01966 937 Gene3D Ribonuclease Inhibitor 544 723 IPR032675 -
Rops5g01966 937 PRINTS Disease resistance protein signature 217 232 - -
Rops5g01966 937 PRINTS Disease resistance protein signature 689 705 - -
Rops5g01966 937 PRINTS Disease resistance protein signature 294 308 - -
Rops5g01966 937 PRINTS Disease resistance protein signature 386 400 - -
Rops5g01966 937 SMART till_3 13 156 IPR000157 GO:0007165
Rops5g01966 937 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 182 - -
Rops5g01966 937 Gene3D Ribonuclease Inhibitor 724 929 IPR032675 -
Rops5g01966 937 SUPERFAMILY L domain-like 488 868 - -
Rops5g01966 937 Gene3D - 351 436 IPR042197 -
Rops5g01966 937 ProSiteProfiles TIR domain profile. 12 181 IPR000157 GO:0007165
Rops5g01966 937 Pfam NB-ARC domain 196 421 IPR002182 GO:0043531
Rops5g01966 937 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Rops5g01966 937 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 710 IPR044974 GO:0006952
Rops5g01966 937 Pfam TIR domain 13 177 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01966 Rops-Chr5 41581250 41587505 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01966 9 801 WRKY Transcription Factor Family AT4G12020 30.976 5.40e-90 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01966 - - gsj:114376984 1120.53