Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01959 ATGACAAACCATGGAGAAGAGTCCGGTAGCTTCACCTATGATGCTTTCCTCAGTTTTAGAGGTGAAGACACAAGACACACATTTATAGGATATCTCCGTAAAGAGTTGTGGCGGAAGGCAATCAAAACTTTCGCTGATGATAATGATGAGGATATGAGAATAGGGGAAGGTATTTCACCTTCTCTTTCCCAAGCCATTGAAGAATCTAAGATTTATGTTGTTGTGCTTTCTGAGAATTATGCATCTTCAACCTGGTGCCTTTGGGAACTTGTCAAGATCTTAGAATGCAAGAAGGGAGACAACAAAAGACACGTTTTCCCAATTTTTTACCATGTAGATCCATCAGATGTACGGCATCAAAGAAACAGTTATGGCAAAGCAATGAAAGCACATGAGAACAGGTTTGGTGAGAACTCTGAGAAAGTGCAAAGATGGAAATCAGCTTTGTCTGAAATAGCTAGCTTAAAAGGGCTCCATCTTACTACCGGGTCTGAAATCAATTTTATTGAAAAGATTGTTGAAACAGTCTTAGCTGAAATTCCTCCTAAAAATATACATGTTAGTCAGGATCCAGTTGGACTTGAGCATCGCATAGAAGAGGTTATGTCACTTCTGGACATAAAGTCTAACGATGATACTGTAAGCATGTTGGGCATATATGGACTTGGCGGAGTAGGGAAAACAGAAATTGTCAAAGCTTTGTATAACAAGATTGTGCACCAATTTGAAGCTGCAAGTTTTCTTGAGAATGTTAGAGAGAAATCAAAAAAAATCAATGGCCTTGAAGATCTACAAAAGATACTTCTATCAGAGATGCGGGAGGAATCAAAATCCAAGTTTGGCAGCACGAGTAAAGGAATCAAAGAAATAAAATGCAAACTTAACAAGAAAAAAGTTCTTTTGGTCCTTGATGACATTGATGACAGAGAACAATTAGATAACTTGGCAGGAGATTGTGATTGGTTTGGTTCCGGTAGCAGGATCATTATAACAACAAGGGACAAAGATTTGCTTGGTTATCCAATTAAAAAGGTTTATGAAATGAAAGAGCTTAATGAGCAGCATTCTCTTGAGCTCTTTTGTCAGAATACCTTTGGAAAGAGCCATCCTAAAATAGGCTATGAAAATATGTCTTCTCGTGCAGTATGTTATGCTATGGGTCTTCCGTTGGCTTTAAAAGTAATAGCCTCCGATTTGGCTACTCAAAAAAGTGTAGAAGCTTGGGAATGTGCATTGGAAGAATACAAGAGAATTCCAAAATCAAGGATTCAAGACAAGCTCAAAATAAGTTATGATAGATTAGAGGATCGTGCCAAGAGTGTTTTCCTAGACATAGCATGCTTCTTCAAAGGGAAGCAAATTGAATATGTTAAAAAGATACTTGAAGAATTCAATGCAACACATAATATTGAAGTACTAGTTAATAAATCTCTCCTAACTGTTGAAAATGGCTGCTTGAAGATGCATGATTTAATACAAGATATGGGTAGAGAGATTGTTAGGCAAGAGGCACCAAATCCTGGCAAACGCAGTAGATTATGGTTTTATGAAGATGTTGTCGAAGTTTTGACTGAAGATTCTGGAAGTGATGCAATACAAGGGATAATGCTTGATCCCCCTCAAAGAGAAGAAGTTGAATGGAGTGGTACTGCCTTTGAGAAGATGAAATACCTCAGAATTCTCATTGTTCGAAATACATCCTTTTCATCAGGGCCTATGTATCTATCAAATTATTTGAGGCTGCTTGATTGGGAGGAGTACCCTTCAAAGTATTTCCCACCAAAATTTTATCCAAAGAAAATCATTCTCTTCAATTTGTCTAAAAGCTATCTTGAGCAACAAGAACCATTTAAGAAATTTTCATATCTGACTAGCATGAATTTCTCGTGGAATCAATCCCTCACTGCAATACCTGATGTTTCCGAACTTCAAGCTTTGATACATCTAAGACTTGATCATTGTGAAAACCTGATTGAGGTCCATGAGTCTGTTGGTTTTCTCAAAAAGCTCGCTCTCTTAGATGCTTCCAGATGCACTAAACTTATAAATTTCCCACGAAGAATGTTTTTACCATCGTTGGAAGTCCTTTATCTTGATTTATGTGTAAGACTTGAACACTTCCCAGAGATAGTGAACAAGATGGAAAAGTCATTGCAGATTCATATGAAAAGAACTGCTATCAAGGAGCTCCCAGATTCCATTGATAACCTTATTGGGCATGTTTGGATAAATATGTCAAGAAACAAGAAGCTCAGATATCTACCAAGCAGCTTTTTCAAGATGCAAAATCTTACTGTCTTGAAGATTCAAGGGTGTCCTCACCTTCGAGAATACTTTAGAAGGTTCGTACAAAACCCTTCAGCAATCAATGATCGTCCCACATTAAGAAAATTGGATTTTGAAAATGGTGGTTTGTCAGATGAAGATCTTCATGTGGTTCTCAATTGTTTTCCAAAATTAGAATATTTGATTGTATCGTTAAACAATTTTGTATCTCTCCCTGAATGCATTAAAGAGTTTGTTCACTTGAGATCTCTTGATGTCCGTTGGTGTATGAAACTTGAACATATGGGGTTGCCGTCTACGATTCAGAAAGTAAACGCAACCAATTGCTTCTCCTTAACTAGAGAGACGTTAATCATGTTATGGTCTCAGCGTCACAACCTTGATTCTCAAGAGAAGGCATCAAAGATTTCTGACTCAAAATCTGCTTTGAGTGGCACTAAGATTGGACAAGAAGAAGGCTTCAAAGGTGCTATAAAGTATGAGAAGTTGGCTGCTGTTTTGGAAGGAAAAGCTGAAGAATTATAG 2811 0.3746 MTNHGEESGSFTYDAFLSFRGEDTRHTFIGYLRKELWRKAIKTFADDNDEDMRIGEGISPSLSQAIEESKIYVVVLSENYASSTWCLWELVKILECKKGDNKRHVFPIFYHVDPSDVRHQRNSYGKAMKAHENRFGENSEKVQRWKSALSEIASLKGLHLTTGSEINFIEKIVETVLAEIPPKNIHVSQDPVGLEHRIEEVMSLLDIKSNDDTVSMLGIYGLGGVGKTEIVKALYNKIVHQFEAASFLENVREKSKKINGLEDLQKILLSEMREESKSKFGSTSKGIKEIKCKLNKKKVLLVLDDIDDREQLDNLAGDCDWFGSGSRIIITTRDKDLLGYPIKKVYEMKELNEQHSLELFCQNTFGKSHPKIGYENMSSRAVCYAMGLPLALKVIASDLATQKSVEAWECALEEYKRIPKSRIQDKLKISYDRLEDRAKSVFLDIACFFKGKQIEYVKKILEEFNATHNIEVLVNKSLLTVENGCLKMHDLIQDMGREIVRQEAPNPGKRSRLWFYEDVVEVLTEDSGSDAIQGIMLDPPQREEVEWSGTAFEKMKYLRILIVRNTSFSSGPMYLSNYLRLLDWEEYPSKYFPPKFYPKKIILFNLSKSYLEQQEPFKKFSYLTSMNFSWNQSLTAIPDVSELQALIHLRLDHCENLIEVHESVGFLKKLALLDASRCTKLINFPRRMFLPSLEVLYLDLCVRLEHFPEIVNKMEKSLQIHMKRTAIKELPDSIDNLIGHVWINMSRNKKLRYLPSSFFKMQNLTVLKIQGCPHLREYFRRFVQNPSAINDRPTLRKLDFENGGLSDEDLHVVLNCFPKLEYLIVSLNNFVSLPECIKEFVHLRSLDVRWCMKLEHMGLPSTIQKVNATNCFSLTRETLIMLWSQRHNLDSQEKASKISDSKSALSGTKIGQEEGFKGAIKYEKLAAVLEGKAEEL* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01959 936 Gene3D - 10 176 IPR035897 -
Rops5g01959 936 Gene3D - 350 435 IPR042197 -
Rops5g01959 936 SMART till_3 12 155 IPR000157 GO:0007165
Rops5g01959 936 ProSiteProfiles TIR domain profile. 11 180 IPR000157 GO:0007165
Rops5g01959 936 PRINTS Disease resistance protein signature 216 231 - -
Rops5g01959 936 PRINTS Disease resistance protein signature 293 307 - -
Rops5g01959 936 PRINTS Disease resistance protein signature 385 399 - -
Rops5g01959 936 PRINTS Disease resistance protein signature 665 681 - -
Rops5g01959 936 Gene3D Ribonuclease Inhibitor 722 889 IPR032675 -
Rops5g01959 936 Gene3D Ribonuclease Inhibitor 544 721 IPR032675 -
Rops5g01959 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 445 IPR027417 -
Rops5g01959 936 Pfam TIR domain 13 176 IPR000157 GO:0007165
Rops5g01959 936 Gene3D - 177 342 IPR027417 -
Rops5g01959 936 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 181 - -
Rops5g01959 936 Pfam NB-ARC domain 195 420 IPR002182 GO:0043531
Rops5g01959 936 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 709 IPR044974 GO:0006952
Rops5g01959 936 SUPERFAMILY L domain-like 487 868 - -
Rops5g01959 936 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 157 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01959 Rops-Chr5 41495516 41502135 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01959 8 778 WRKY Transcription Factor Family AT4G12020 31.960 1.58e-94 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01959 - - gsj:114376984 1111.29