Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01955 ATGGCAAACTATGGAGGAGAAGAGTCCAGTAGTTTCGCCTATGATGTTTTCATCAGTTTTAGAGGTGAAGACACAAGACACACATTTATAGGATATCTCCGTAAAGAGTTGTGGCGGAAGGGAATCAAAACTTTTGCTGATGATAATGATGAGGATATGAGGATAGGGGAGGGTATTTCACCTTCTCTTTCCCAAGCCATTGAAGAATCTAAGATTTATGTTATTGTGCTTTCTGAGAATTATGCATCTTCAACATGGTGCCTTTGGGAACTTGTCAAGATCTTAGACTGTAAGAAGGAAAACAACAAAAGGCATGTTTTCCCAATTTTTTACCATGTAGATCCATCGGATGTACGACATCAGAGAAACAGTTATGGCGAAGCAATGAAAGCACATGAGAACAGGTTTGGTGAGAACTCTGAGAAAGTGCAAAAATGGAAATCAGCTTTGTCTGAAATAGCTAGCTTAAAAGGGCTCCATCTTACTACCGGGTATGATCCAGTTGGACTTGAGCACCGCATAGAGCAAGTGATGTCATTACTAGACATGAAGTCTAATGATGATAACGTAAGCATGTTGGGCATATATGGACTTGGTGGAGTAGGGAAAACAGAACTTGCCAAAGCTTTGTATAACAAGATTGTGCACCAATTTGAAGCTGCAAGTTTTCTTGAGAATGTTGGAGAGAAATCAAAAAAAATCAATGGCCTTGTAGATCTACAAAAGATACTTCTATCAGAGATGAGGGCGGATTCAGAAACCGAGTTGGGTAGTACGAGTAGAGGAATCAAAGAAATTAAACGCAACCTTAACAAGAAAAAAATTCTTTTGGTCCTTGATGACATTGATGACAGAGAACAATTAAATAACTTGGCAGGAGATTGTGATTGGTTTGGTTCCGGTAGCAGGATCATTATAACAACAAGGGAAAAAGATTTGCTTGGTTATCCAATTAAAGAGGTTTATGAAATGAAAGAGCTTAATGAGCAGCATTCTCTTGAGCTCTTTTGTCAGAATGCCTTTAGAAAAAGCCATCCTGAAGAAGGCTATGAAGATATGTCTTCTCATGCAGTAGGTTATGCTATGGGTCTTCCATTGGCTTTAAAAGTAATAGGCTGTGATTTGGCTACTCAAAAAAGTTTAGAAGCTTGGGAATGCACATTGAAAGAATACAAGAGCATTCCAAATACAAGGATTCAAGACAAGCTCAAAATAAGCTACGATAGGCTGGAGGACAATGCCAAGAGTGTTTTCCTAGACATAGCTTGCTTCTTCAAAGGGGGGAGAATACAATTCGTTAATGAGATACTTGAGGAATTCAATGCAGCACGTAATATTGAAGTACTAGTTAATAAATCTCTCCTAACTGTTGAAAATGGCTGCTTGAAGATGCATGATCTAATACAAGATATGGGTAGAGAGATTGTTAGGCAAGAGGCACCAAATCCTGGCAAACGCAGTAGATTATGGTTTTATGAAGATGTTGTCGAAGTTTTGACTGAAGATTCTGGAAGTGATGCGATACAAGGGATAATGCTTGATCCCCCTCAACGACAAGAAGTTGAATGGAGTGGTACTGCCTTTGAGAAGATGAAATACCTCAGAATTCTCATTATTCGAAATACATCCTTTTCATCAGGGCCTATATATCTATCAAATCATTTAAGGCTGCTTGATTGGGAGGAGTACCCTTCAAAGTCTTTCCCACCAAAATTTTATCCAAAGAAAATCATTGTCTTCAATTTGTCTAAAAGCTATCTTGAGCTAAAAGAACCATTTAAGAAATTTTCAAATCTGACTAGCATGGATTTCTCCTATAATCAATCTCTCACTGCAATACCTGATGTGTCCGAACTTCAAACTTTGATGAAACTAAGACTTTATGGTTGTGAGAACCTAATTGAGGTCCATGAGTCTGTTGGTTTTCTCAAAAAGCTCGCTCACTTAAATGCCTTCGGATGCACCAAACTTATAAATTTCCCACGAAGAATGTTTTTACCATCGTTGGAATTCCTTAACCTTAATTCATGCGTAAGACTTGAACACTTCCCAGACATAGTGAACAAGATGAAAAAGCCATTGGCGATTCATTTGGAAAAAACTGCTATCAAGGAGCTCCCAGATTCTATTGATAACCTTATTGGGTTTTTATATTTAGATATATCAAGAAACAAGAAGCTCAGATATCTACCAAGCAGCTTTTTCAAGATGCAAAATGTTGTAAACTTTGACATTGGAAAGTGTCCTCAACTTCGAGAATACTTTAGAAGGTTCGTACAAAACCCTTCAGCAATCAATGATTGTCCCCCATTAACAAGATTGGATTTTGAAAATAGTGGTTTGTCAGATGAAGATCTTCATGGAGTTCTCAACTGTTTTCCAAAATTAGAAGTATTGAATGTATCGCACAACAATTTTGTATCTCTCCCTGAATGCATTAAAAAGTTGGTTCACTTGAGATTTCTTGATGTCTGTTGGTGTATGAAGCTTGAACACATTTCGGAGTTACCGTCTACGATTGAGAGTGTAGACGCAACCGGTTGCTTCTCCTTAAAAAGAAAGACGATAACCATGTTATGGTCTCAGGTATCAAAAGAGATACGTGGATTAGAAATTATGATGCCCCAAAGCGACATTCCAGAATGAAGCGTCGATTCTCAAGAGAAGGCATCAAAGATTTCTGACTCAAAATCTGCTTTGAGTGGCACAAAGATTGGACAAGAAGGCTGCAAAGGTGCTACAAAGTATGAGAAGTTGGCTGCTGTTTTGGAAGGAAGAGCTGAAGAATTATAG 2793 0.3813 MANYGGEESSSFAYDVFISFRGEDTRHTFIGYLRKELWRKGIKTFADDNDEDMRIGEGISPSLSQAIEESKIYVIVLSENYASSTWCLWELVKILDCKKENNKRHVFPIFYHVDPSDVRHQRNSYGEAMKAHENRFGENSEKVQKWKSALSEIASLKGLHLTTGYDPVGLEHRIEQVMSLLDMKSNDDNVSMLGIYGLGGVGKTELAKALYNKIVHQFEAASFLENVGEKSKKINGLVDLQKILLSEMRADSETELGSTSRGIKEIKRNLNKKKILLVLDDIDDREQLNNLAGDCDWFGSGSRIIITTREKDLLGYPIKEVYEMKELNEQHSLELFCQNAFRKSHPEEGYEDMSSHAVGYAMGLPLALKVIGCDLATQKSLEAWECTLKEYKSIPNTRIQDKLKISYDRLEDNAKSVFLDIACFFKGGRIQFVNEILEEFNAARNIEVLVNKSLLTVENGCLKMHDLIQDMGREIVRQEAPNPGKRSRLWFYEDVVEVLTEDSGSDAIQGIMLDPPQRQEVEWSGTAFEKMKYLRILIIRNTSFSSGPIYLSNHLRLLDWEEYPSKSFPPKFYPKKIIVFNLSKSYLELKEPFKKFSNLTSMDFSYNQSLTAIPDVSELQTLMKLRLYGCENLIEVHESVGFLKKLAHLNAFGCTKLINFPRRMFLPSLEFLNLNSCVRLEHFPDIVNKMKKPLAIHLEKTAIKELPDSIDNLIGFLYLDISRNKKLRYLPSSFFKMQNVVNFDIGKCPQLREYFRRFVQNPSAINDCPPLTRLDFENSGLSDEDLHGVLNCFPKLEVLNVSHNNFVSLPECIKKLVHLRFLDVCWCMKLEHISELPSTIESVDATGCFSLKRKTITMLWSQVSKEIRGLEIMMPQSDIPE*SVDSQEKASKISDSKSALSGTKIGQEGCKGATKYEKLAAVLEGRAEEL* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01955 929 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 685 IPR044974 GO:0006952
Rops5g01955 929 PRINTS Disease resistance protein signature 269 283 - -
Rops5g01955 929 PRINTS Disease resistance protein signature 361 375 - -
Rops5g01955 929 PRINTS Disease resistance protein signature 192 207 - -
Rops5g01955 929 PRINTS Disease resistance protein signature 664 680 - -
Rops5g01955 929 SMART till_3 13 156 IPR000157 GO:0007165
Rops5g01955 929 Gene3D - 326 411 IPR042197 -
Rops5g01955 929 ProSiteProfiles TIR domain profile. 12 181 IPR000157 GO:0007165
Rops5g01955 929 SUPERFAMILY L domain-like 508 853 - -
Rops5g01955 929 Gene3D - 4 154 IPR035897 -
Rops5g01955 929 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 182 - -
Rops5g01955 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 421 IPR027417 -
Rops5g01955 929 Gene3D Ribonuclease Inhibitor 696 871 IPR032675 -
Rops5g01955 929 Gene3D Ribonuclease Inhibitor 521 695 IPR032675 -
Rops5g01955 929 SUPERFAMILY "Winged helix" DNA-binding domain 398 499 IPR036390 -
Rops5g01955 929 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Rops5g01955 929 MobiDBLite consensus disorder prediction 881 906 - -
Rops5g01955 929 Gene3D - 155 317 IPR027417 -
Rops5g01955 929 Pfam NB-ARC domain 171 397 IPR002182 GO:0043531
Rops5g01955 929 Pfam TIR domain 13 157 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01955 Rops-Chr5 41405531 41412983 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01955 9 754 WRKY Transcription Factor Family AT4G12020 31.566 1.44e-91 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01955 - - gsj:114376984 1095.11