Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01944 ATGTTGCAGCAGAGACTTGTGAGATCTTCAAACTACCACATCCCCAAAGGTGCAACTCTTTTGGTCAATGTTTGGGCCATAGCTCGTGACCCCAAGGAATGGCATAACCCATTGGAGTTCAAGCCCGAAAGGTTCCTCCCCGATGGTGAGAAGGCTCATGTTGATGTTAGGGGCAATGACTTTGAGGCTATACCCTTTGGTGTTGGACGTAGAATGTGTTCTGGTATGAGCTTGGGGCTTAGGATGGTTCAATTTCTCACTGCAACATTGGCACATGCATTTGAATGGGAGCTAGAGAATGGGTTGGACCCAGAAAAGCTCAACAAGGACTCCAACAACAATGAAAACAACAACTCAAATGCAGTTGACAAAAGGTTTAAGACCTTGCCTGCAGTAGAGACACTCCCACGTAATGAGATGCTAGGGGGATACATCTTTGTCTATAATAATGACACGGTGCAGGAAGACTTAAATAGTCAGTTTTTCAGTTGGCCTCCAAGGTACCGAGATTCTGTCAGGGCAATAACACCAGGGTTACCTCTATTTCCATATAACTATACTACCCATCAGCTGCATGGCATTTTTGTGGAGGCAAGTTTTGGGGGCTCTAACGTAGATCCAACTGCATGGGAGGATGAAAAATTGCTAAGACGAATCAAGGTTTCCTGCTTGGTTTTCATTCATCCTTCTCAAACCAAACAAGCCTCCCAAGCCGTTCTCCGTGAACTCGACTTTTTGCTTTTCACGTTCAGTGAAGCCTTTGACGGCGTCGTATTGGCTTATGATGTTAACTCACTTGACAAGTGTGCGAAGATTCTTCCTGGTGTTCATCCTTATATTAGTGTTAAATTGAAGGTCAACTTGTTACTTTATTCTCCCAAGCCAGATATGCTTTTAGAAGGGAAGGTTGTTAAACTCACACAAGAGTCCATTCATGTTGTTGTGCTTGGCTTTTCTTCTGCGATTATAACTGAGAAAGATATTAGAGAAGAGTTCATATACAAAATGAAACACGGGCAAGATGTGTATGCGAGCAAATCTCATAAGCGATACGTGATAAAGGTTGGAACCATGATACGATTTTTGGTCAAGAGCTTTGATGAGGAAATACTTCATGTTTATGGATCTTTGATTACCGGAACACACAAGCAACATACAATGGTTGGATAA 1170 0.4274 MLQQRLVRSSNYHIPKGATLLVNVWAIARDPKEWHNPLEFKPERFLPDGEKAHVDVRGNDFEAIPFGVGRRMCSGMSLGLRMVQFLTATLAHAFEWELENGLDPEKLNKDSNNNENNNSNAVDKRFKTLPAVETLPRNEMLGGYIFVYNNDTVQEDLNSQFFSWPPRYRDSVRAITPGLPLFPYNYTTHQLHGIFVEASFGGSNVDPTAWEDEKLLRRIKVSCLVFIHPSQTKQASQAVLRELDFLLFTFSEAFDGVVLAYDVNSLDKCAKILPGVHPYISVKLKVNLLLYSPKPDMLLEGKVVKLTQESIHVVVLGFSSAIITEKDIREEFIYKMKHGQDVYASKSHKRYVIKVGTMIRFLVKSFDEEILHVYGSLITGTHKQHTMVG* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01944 389 Pfam Development and cell death domain 142 239 IPR013989 -
Rops5g01944 389 Gene3D - 204 295 IPR036898 -
Rops5g01944 389 SMART dcd 139 252 IPR013989 -
Rops5g01944 389 Gene3D Cytochrome P450 4 126 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g01944 389 Pfam Cytochrome P450 10 108 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g01944 389 SUPERFAMILY Nucleic acid-binding proteins 293 369 IPR012340 -
Rops5g01944 389 SUPERFAMILY Cytochrome P450 10 103 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g01944 389 ProSiteProfiles DCD domain profile. 139 266 IPR013989 -
Rops5g01944 389 PRINTS E-class P450 group I signature 63 73 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g01944 389 PRINTS E-class P450 group I signature 73 96 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g01944 389 PRINTS E-class P450 group I signature 23 47 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g01944 389 PANTHER - 113 215 IPR044832 GO:0034976
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01944 Rops-Chr5 41146247 41147496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01944 10 112 Cytochrome P450 AT5G07990 66.990 5.23e-46 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01944 - - gmx:100527229 256.529