Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01937 ATGGAAATTCAATTTCAGAAAACAAAGCAGAATTTGAGACCAAAAGGAAGCAAATTCAAAGGGAGAAACAAAAACAGCAACACAAACAAGTTTGTTGGGGTGAGACAAAGACCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACACAAAAGATAAGAATGTGGCTTGGAACATTTGAAACTGCAGAGGAAGCAGCAAGAGCTTATGATGAAGCTGCATGCCTTCTTCGTGGTTCCAACACTCGCACCAACTTCATCACTCATGTATCATTGGATTCACCTCTAGCTTCAAGGATTAGAAATCTTCTTAACAACAAAAAGGGTACTCAAAAACAGGAACATGTGGATGAATCTTCCACAAGAGTAAGCAGCACCACTAGTAGTCGTAGTAGCACTAGTAGTAGTACTAATTCAAGCAATAGCATCAATGACAACAGTGAAAACTCACTTTCTAGTGGGACAACAACACAAAACATAGAACTATTTGATGATGCTTATAGACCAGATTTGAGCAATTTCATGGAAAAGTCTGAGTCAGGTTCCAAGTCAAATCTTTCATGGGGTTATGAACCTGTTTTTGATTGTTTTCCTTTTGCTCAAGTGATGGATGTATCAAAACCTGATGGCATAGCTGCCTTGGAGCTTTCAGAATTTGAAAGGATGAAAGTTGAGAGACAAATATCAGCTTCACTTTATGCAATTAATGGTGTGCAAGAGTATATGGAAACTGTTCAGGACCCTAGTGAAGCTCTCTGGGATCTTCCACCCTTGAGCTCATTTTTCTGTTAA 792 0.3927 MEIQFQKTKQNLRPKGSKFKGRNKNSNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGTQKQEHVDESSTRVSSTTSSRSSTSSSTNSSNSINDNSENSLSSGTTTQNIELFDDAYRPDLSNFMEKSESGSKSNLSWGYEPVFDCFPFAQVMDVSKPDGIAALELSEFERMKVERQISASLYAINGVQEYMETVQDPSEALWDLPPLSSFFC* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01937 263 MobiDBLite consensus disorder prediction 106 156 - -
Rops5g01937 263 MobiDBLite consensus disorder prediction 120 156 - -
Rops5g01937 263 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Rops5g01937 263 SUPERFAMILY DNA-binding domain 30 87 IPR016177 GO:0003677
Rops5g01937 263 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Rops5g01937 263 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 229 - -
Rops5g01937 263 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Rops5g01937 263 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Rops5g01937 263 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Rops5g01937 263 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Rops5g01937 263 MobiDBLite consensus disorder prediction 1 30 - -
Rops5g01937 263 CDD AP2 30 86 IPR001471 GO:0003700|GO:0006355
Rops5g01937 263 FunFam ethylene-responsive transcription factor RAP2-11 29 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01937 Rops-Chr5 40881404 40882479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01937 27 263 AP2-EREBP Transcription Factor Family AT5G19790 45.200 1.45e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops5g01937 AP2 5.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01937 K09286 - gmx:100796898 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02501 8 57427738 57428541 Rops5g01937 5 40881404 40882479 PCT