Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01936 ATGAACGATCTTCTAACGGAATCGTTTGAGATCCCACGTGGCCGAGGTCACGGAGGTGGTGACATTGAGTTAGGAGAATATGCAAGGAATTCAGGAGAGATGGGCTTGGATGGTTTCTTCAAAAAGGTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGCGAAAGCTCCAGGATGCCCATGAGGAGTCCAAATCTGTGACCAAGGCTCCTGCCATGAAGGGTATAAAGCAGAGAATGGAGAAAGATGTTGATGAAGTTAAGAAAACTGCACATTACTTAAAAACCAAAATTGAAGAGCTGGACAAAGAGAATTTGGCAAATAGGCAGAAGCCTGGGTGTGGAAAGGGATCAGCTGTGGACCGGTCAAGAACAGCAACAACCATTTCCTTAAAAAAGAAACTCAAGGACAAGATGGCTGAATTTCAGAACTTAAGAGAAGCCATGCATCAAGAATATCGCGAGGTTGTTGAGAGGCGTGTCTTTACAGTAACGGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAGACCGGGGATAGTGAACAAATTTTCCAGAAGGCAATTCAAGAACAGGGACGGGGCCAGATAATGGACACCCTGGCAGAAATTCAGGAGCGACATGAAGCAGTTAGAGATGTTGAGAGGAAGCTTCTTGATTTACAACAGATATTTCTGGATATTGCAGTGTTAGTCGATGCACAAGGAGACATGCTTGACAACATTGAAACACAGGTTTCAAGTGCAGTAGATCACGTGCAGCGAGGCAATAGTGCCCTTCAGAATGCAAAGAAACTACAAAAGAGCTCTAGAAAATGGATGTGCATTGCAATCATGATACTTCTCATTGTTGTTATAATCATTGTGGTTGCTGTCATCAAACCATGGGTTACCAAAAAGGGTGCTTAG 924 0.4318 MNDLLTESFEIPRGRGHGGGDIELGEYARNSGEMGLDGFFKKVQELDKQYAKLDKLLRKLQDAHEESKSVTKAPAMKGIKQRMEKDVDEVKKTAHYLKTKIEELDKENLANRQKPGCGKGSAVDRSRTATTISLKKKLKDKMAEFQNLREAMHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHEAVRDVERKLLDLQQIFLDIAVLVDAQGDMLDNIETQVSSAVDHVQRGNSALQNAKKLQKSSRKWMCIAIMILLIVVIIIVVAVIKPWVTKKGA* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01936 307 Gene3D - 197 299 - -
Rops5g01936 307 Pfam SNARE domain 242 294 IPR000727 -
Rops5g01936 307 Pfam Syntaxin 39 241 IPR006011 GO:0016020
Rops5g01936 307 SMART tSNARE_6 201 268 IPR000727 -
Rops5g01936 307 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Rops5g01936 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Rops5g01936 307 SMART SynN_4 31 157 IPR006011 GO:0016020
Rops5g01936 307 CDD SynN 36 193 IPR006011 GO:0016020
Rops5g01936 307 SUPERFAMILY t-snare proteins 34 261 IPR010989 GO:0016020|GO:0016192
Rops5g01936 307 CDD SNARE_syntaxin1-like 205 266 - -
Rops5g01936 307 Gene3D - 33 160 - -
Rops5g01936 307 PANTHER SYNTAXIN 40 293 IPR045242 -
Rops5g01936 307 Coils Coil 87 107 - -
Rops5g01936 307 Coils Coil 43 73 - -
Rops5g01936 307 FunFam Syntaxin 132 31 160 - -
Rops5g01936 307 Coils Coil 135 158 - -
Rops5g01936 307 FunFam Syntaxin 132 199 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01936 Rops-Chr5 40851102 40871294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01936 1 307 SNARE and Associated Proteins AT3G03800 73.616 3.38e-157 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01936 K08486 - gmx:100306329 536.569