Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01933 ATGGAGTGCCCACATCCAGATGAAGCCCAACGACATCGACTAGCCACTGAGGTTGGGCTTGAGCCCAAACAAATTAAATTTTGGTTTCAGAACAAGAGAACTCAACTTAAGATTGAGAAAGTGTCTAACCTTCTTGCGAGGTACTTGGAGCAACAAGTGTCACAACCTGAGGTGCAGCAAGCTCCCACTCCTATCATAGGGTCTTCATGTGAGGCTTCTTTTCCTATCGTAGGATCTTCACTTGATCCAGAACTTGGAAGTTTGCAAAACCAAGGGAATGATGGAAGTCCAAGTCATGATCGACATCTTGGTACACCAATTATGGGTGATGGCATATTATTGCACAGCCCGATGGAAATTTTGGATAGAGAAAAAGCATTGATGTATAAGGTTGTAACTACTGCAATTGATGAATTAGTTAGGCTTTTGATCATCAATGAGCCCTTCTGGGTCAACTCTTCAACTCAAAATGGGAAACTCACTCTTCATAGAGAAACTTATGAACGTTTTTTCCCGAAGACCAATCACTTCAAAGGTGCCAATGTGCGTGTAGAGTCATCAAAATATTTCGGAATAGTCAACCTTAGTGGCATTCAACTGGTTGACATGTTTCTAGATTCAGACAAATGGGTTAACCTTTTCCCAACAATTGTCACAAATGCTAAAATAATCAAAGTGATTGAAAGTGGTTTGTCGGGGAGTCGAAATGGAGCCTTGCAGTTGATGTACGAAGAAATGCACATTCTTTCACCTTTAGTACAACCTCGTGAATTTCACTTCCTTCGCTATTGTCAACAACTTGAAGTTGGGGTATGGGTAATAACAGATGTGTCGTTTGATTCCGTTCAACAAAACACCCTACTTTGTCACTCTTGGAGATATCCCTCTGGATGCATGATTCAGGAAATCCCTAATGCAGGTTGCATGGTTACATGGGTTGAACATGTTGAAGTTGATGATAAGATCCAAACCCACGAACTTTATAGAGATCTTGTTGGTATCAGTATTGCATATGGAGCAGAAAGATGGATGAAGGAGCTTCAAAGAATGTGTGAGAGATTTAGTAGCTATTGGGTTCGAACAATACCTAATCATGACTCTAGAGGAGTGATCAATTCACTTGAAGGGAGAAGGAGTGTAATGAAGCTTTCTCATCGAATGGTTCAAATGTTTTGTGGAAGTTTAACCATGTCAGGTCAAGTGAAAATCCCACATTTAACTGTGGAGAATAATAGTGGTGTTAGGGTCTCTATCCGTAAAAGCTCAGGTATAGGCGAGCCAAATGGCATGGTTATTATTGTTGCTACCTCCTTTTGGCTTCCTCTTCATTATGAGAAAGTTTTTGAGTTCTTCACTGATGTTAAAAGACGAGCTCAGTGGGATGTTCTTGCTTTTGGAAATTTAGTGCATGAGATTGCACACATTTCAAATGGAATTCATCATGGCAATTGTGTATCAATTATTAGGCCATACATCCCCAATGAGAACAATTTGATGATTCTTCAAGAAAGTTTTACTGATCCCATGGGATCATATGTTGTATATGCTCCAACTGATTTAGCAGCTATGAATATGGCCATAAAGGGTGAAGACATTTCAATGTTATCAGTTCTTCCATCAGGTTTTGTCATCTCTGCAGATGGCCAACCAAATGCAACTTTGGGAACATTTAACAATGGAAATACTGATAGATCTGGAGGCTCATTATTGACTGTGGCATTCCAAATACTGGTCTCTGGTTCCGATGGAATCAAGCTGCAAAACATGGAATCTATGGCAGATGTCAACACCCTTTTAACCTCAACAGTCCAGAAAATAAAGGATGCTCTGAATTGTAACAATTCAAAGTAA 1851 0.3992 MECPHPDEAQRHRLATEVGLEPKQIKFWFQNKRTQLKIEKVSNLLARYLEQQVSQPEVQQAPTPIIGSSCEASFPIVGSSLDPELGSLQNQGNDGSPSHDRHLGTPIMGDGILLHSPMEILDREKALMYKVVTTAIDELVRLLIINEPFWVNSSTQNGKLTLHRETYERFFPKTNHFKGANVRVESSKYFGIVNLSGIQLVDMFLDSDKWVNLFPTIVTNAKIIKVIESGLSGSRNGALQLMYEEMHILSPLVQPREFHFLRYCQQLEVGVWVITDVSFDSVQQNTLLCHSWRYPSGCMIQEIPNAGCMVTWVEHVEVDDKIQTHELYRDLVGISIAYGAERWMKELQRMCERFSSYWVRTIPNHDSRGVINSLEGRRSVMKLSHRMVQMFCGSLTMSGQVKIPHLTVENNSGVRVSIRKSSGIGEPNGMVIIVATSFWLPLHYEKVFEFFTDVKRRAQWDVLAFGNLVHEIAHISNGIHHGNCVSIIRPYIPNENNLMILQESFTDPMGSYVVYAPTDLAAMNMAIKGEDISMLSVLPSGFVISADGQPNATLGTFNNGNTDRSGGSLLTVAFQILVSGSDGIKLQNMESMADVNTLLTSTVQKIKDALNCNNSK* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01933 616 Pfam Homeodomain 2 37 IPR001356 GO:0003677
Rops5g01933 616 SUPERFAMILY Bet v1-like 124 355 - -
Rops5g01933 616 CDD homeodomain 2 40 IPR001356 GO:0003677
Rops5g01933 616 Gene3D - 1 47 - -
Rops5g01933 616 ProSiteProfiles 'Homeobox' domain profile. 1 39 IPR001356 GO:0003677
Rops5g01933 616 ProSiteProfiles START domain profile. 121 356 IPR002913 GO:0008289
Rops5g01933 616 CDD START_ArGLABRA2_like 125 352 - -
Rops5g01933 616 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 2 611 IPR042160 -
Rops5g01933 616 SUPERFAMILY Bet v1-like 409 604 - -
Rops5g01933 616 SMART START_1 130 353 IPR002913 GO:0008289
Rops5g01933 616 Coils Coil 31 51 - -
Rops5g01933 616 Pfam START domain 133 353 IPR002913 GO:0008289
Rops5g01933 616 SUPERFAMILY Homeodomain-like 2 40 IPR009057 -
Rops5g01933 616 Gene3D - 130 352 IPR023393 -
Rops5g01933 616 ProSitePatterns 'Homeobox' domain signature. 14 37 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01933 Rops-Chr5 40756420 40760025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01933 2 611 Homeobox Transcription Factor Family AT1G73360 41.740 4.18e-166 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops5g01933 START 1.5e-33 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01933 K09338 - gmx:100795075 759.599