Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01895 ATGGTTTCTATGGCATTTCTGGAAGGGAGAGGTGATCCTAGTCTTTTAGAGACTCTTGTTGTCTTAATCCCTAAAGTAGATAATCTAGTCCGCTTTAAGGATTTAAGACCAATAAGTCTTTGCAACGTTGCTTATAAGATCATTGACAAAGTATTAGTCAACAGATTCCGCCCTTTGCTTAATGAATTAATAAGCCCTTTACAGGGAAACTTTATTCCAGGTAGAGGGACTATGGACAATATCATTTTGGCACAGGAGGCATCTAAAGAGCAAATGCGTTTGATCTCTAACACTTTATATGCATTCTGTGAAGCCTCTGGGTTGAAGGTTAATTTGGAGAAGTCAAGGATGTTTTGTTCTTGCAGCATACAAAACAGGAGACAAACTAAATTCAAGGCTGGAGATTCTTATATTTGGAAAGGAATCATCAATGCAAAGAATGCTTTATGTGGTGGCTTTGATATGCGCCTGGGCTTTAGAGATATATCTTTATGGTACAGGGATTGGTTAGGAACAGGTAGGATATGTGACTGGATACCTTTCATTCACATATCTGACATGGAAGCAACTATTGCAGATCTTTGGGACCATGGGGTTTGGAATTTTACTTCTTTTTGCACCACAATTCCACAAGATATCATAAAGGAAATAAGCAGTGTGACCATTCCCCAAAACCATGTAGGGGAAGACGTAGTTCTTTTGATGGACAAACCTGATGGCAAATACACAGCGACATCAGCAACTGAAAAGGTAAGATTTTTCTCATGGAAAGTCAATAGGAATGCTCTTCCCACTAATTACAAACGACAACACTGCAATATTAGTGACTCTGCAGCTTGTTCTTGTTGTGGTGACATGATGGAAGATGTTGATCATCTGTTCAAAAATTGCTCTTTCCCTAGAAGTATTTGGCTTCACTTCAGACCTTTCATACCTTATTTGACTGATTCACTGCCTTTTCAAGACTGGTTTGCTGCTATAATGCAACAAAAGGATTTAGTGCTCCCTATCACTACCCTTTGGTGGATATGGAAATGGAGAAATAATTATGCGTTTGATGATCACCATTGGCATATAAATTTTTTCCTTCGCCAGATTATGAATTCTGTCTTGGAGTTTAACAAATTTGGATGGCTTGTTGTTACCCAAAATTCATGGATGGCACCTTACATTGATACTGTCAAACTTAATGTTGATGGCAGCTGGGTTGTAAGTGCTGGAAATGCTCTTCATGTCGAACTTCTTGCTATGGAGGTTGGACTTCAACACGTTTGGAACCAGGGTTATAAAGATGTTATATGTGAGTCAGACTGTATGGAAGCTGTAAATATTGTTTCGAGCAACAGCGATATGAGCAATCATTGGCTTAGGGACATTATCATCAGGATTAGATCAATGAGAGATTGGAATTGGGTTGTCACATTTGTTCATGTCAATAGAGAACATAATCATGTTATCGATGCTTTAGCAAAGCTTGGAGTGCAAGAAGGGATCCCCATGTGCTTTTGGAGATTTCCGCCATCACATATTATTTCTCTTCTTTGTCGTGATTTAATTTTGTAG 1563 0.3864 MVSMAFLEGRGDPSLLETLVVLIPKVDNLVRFKDLRPISLCNVAYKIIDKVLVNRFRPLLNELISPLQGNFIPGRGTMDNIILAQEASKEQMRLISNTLYAFCEASGLKVNLEKSRMFCSCSIQNRRQTKFKAGDSYIWKGIINAKNALCGGFDMRLGFRDISLWYRDWLGTGRICDWIPFIHISDMEATIADLWDHGVWNFTSFCTTIPQDIIKEISSVTIPQNHVGEDVVLLMDKPDGKYTATSATEKVRFFSWKVNRNALPTNYKRQHCNISDSAACSCCGDMMEDVDHLFKNCSFPRSIWLHFRPFIPYLTDSLPFQDWFAAIMQQKDLVLPITTLWWIWKWRNNYAFDDHHWHINFFLRQIMNSVLEFNKFGWLVVTQNSWMAPYIDTVKLNVDGSWVVSAGNALHVELLAMEVGLQHVWNQGYKDVICESDCMEAVNIVSSNSDMSNHWLRDIIIRIRSMRDWNWVVTFVHVNREHNHVIDALAKLGVQEGIPMCFWRFPPSHIISLLCRDLIL* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01895 520 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 128 496 - -
Rops5g01895 520 Pfam Reverse transcriptase-like 403 492 IPR002156 GO:0003676|GO:0004523
Rops5g01895 520 Gene3D - 376 498 IPR036397 GO:0003676
Rops5g01895 520 CDD RNase_H_like 396 491 IPR044730 -
Rops5g01895 520 Pfam zinc-binding in reverse transcriptase 246 304 IPR026960 -
Rops5g01895 520 SUPERFAMILY Ribonuclease H-like 393 496 IPR012337 -
Rops5g01895 520 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 23 87 IPR000477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01895 Rops-Chr5 40114443 40122133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01895 335 496 Glycoside Hydrolase AT2G33160 25.980 4.11e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01895 - - ccaj:109819343 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02378 8 55082782 55086338 Rops5g01895 5 40114443 40122133 PCT