Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01893 ATGGACAGGCTCATAAGGTTAGACCCATCAAACATAGTCCTAATAAGAGTTGAACAAGGGCAAAAGTGCCATGGCAAGATCACCTTACGCAATGTCATGTACACTATGCCAGTGGCATTTAGGCTTCAACCATTGATCAAGACACGTTACACAGTGAAGCCTCAATCAGGGATCATATCCCCTTTAGCCACAGTCACTATAGAGATAACTTATAATCTACCACCAGGCTATAATCTCCCTCACACTTTTCCTCACTCAGATGATTCATTCCTTCTTCACAGTGTCTTGGCTCCTGGTGCAGCCATCAAAGAACCTTCCTCCATGTTTGATGCTGTCCCAATTGACTGGTTCACCACTAAAAAGAAGCAAGTCTTCATTGACAGTGGCATCAAAATCATGTTTGTTGGGTCACAGATTCTGGCTCAATTGGTTGAAGATGGTTCAATGGATGACATAAGAGAGGTACTAGAAAGAAGTGACCAATCATGGAAGGCTGTGAATTCCACAGACCCACAAGGCCAAACACTACTTCACATGGCAATTTCAAAAGCAAGAGCTGATCTGGTTCAGTTACTCCTTGAATTTGAGCCTAACATAGAAATTCCAAACTGTTCTGGCTCAACCCCACTTGAGGCTGCATCTTCTTCTGGTGAAGCCTTAATTGTTGAGCTCCTTTTAGCTCACAAGGCCAACACAGAAAGATCAGAATCATCCATGTTTGGACCAATCCATTATGCTGCAAAAGAAGGACACATGGAAGTTCTAAGGCTTCTCTTACTCAAAGGTGCAAAAGTTAATGCACTCACAAAAGATGGCAACACAGCCTTGCACCTTGCTGTTGAAGAACGAAGAAGAGATTGTGCTAGGCTCCTACTAGCAAATGGAGCCAAAACAGATGTTAGAAACACAAGAGAAGGTGACACCCCTTTACACATAGCATCAACCATAGGAGATGAAAACATGGTAAAGCTCTTGCTTCAAAAGGGTGCTATCAAAGACGTGAGAAATAAACAAGGGAAAACAGCATATGATGTTGCAGCAGAGAATGGCCATGCACGTCTCTTTGATGCACTTCGTTTAGGTGACAACTTGTGTGTTGCAGCTAGAAAAGGTGAAGTGAGGACAATCCAGAAGGTTCTAGAGAATGGTGCAGCCATCAATGGAAGGGACCAAAATGGATGGACAGCACTGCATAGAGCCTCATTCAAAGGGAGAATGGAAGCAGTTCGTGTTCTTGTTGAGAAAGGGATTGATTTGGATGCAAAGGATGAAGATGGGTACACTGCATTGCACTGTGCAGTTGAATCAGGACATGCAGATGTGACAGAGTTTTTGGTGAAGAAAGGTGCTGATGTTGAAGCAAGAACCAACAAGGGTGTGAGTGCATTGCAAATAGCTGAGTCATTGCACTATGTGGGGATCACAAGGATACTTGTTAATGGTGGAGCTAGTAGGGAAAGTTTGAGTCAAATACCAGCATCACCTGCTAAGATTCCATTTGGTACTAAAATGGAAGAAGTTGGGGGTTTGATGAAGAAGAAGAAGATGGGTATAACCAGAGTGCTAAGGGGTAGCTTTGATCGTTCAATGGCTTTGGCTGTGCTCTAA 1608 0.4335 MDRLIRLDPSNIVLIRVEQGQKCHGKITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATVTIEITYNLPPGYNLPHTFPHSDDSFLLHSVLAPGAAIKEPSSMFDAVPIDWFTTKKKQVFIDSGIKIMFVGSQILAQLVEDGSMDDIREVLERSDQSWKAVNSTDPQGQTLLHMAISKARADLVQLLLEFEPNIEIPNCSGSTPLEAASSSGEALIVELLLAHKANTERSESSMFGPIHYAAKEGHMEVLRLLLLKGAKVNALTKDGNTALHLAVEERRRDCARLLLANGAKTDVRNTREGDTPLHIASTIGDENMVKLLLQKGAIKDVRNKQGKTAYDVAAENGHARLFDALRLGDNLCVAARKGEVRTIQKVLENGAAINGRDQNGWTALHRASFKGRMEAVRVLVEKGIDLDAKDEDGYTALHCAVESGHADVTEFLVKKGADVEARTNKGVSALQIAESLHYVGITRILVNGGASRESLSQIPASPAKIPFGTKMEEVGGLMKKKKMGITRVLRGSFDRSMALAVL* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01893 535 Gene3D - 129 236 IPR036770 -
Rops5g01893 535 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Rops5g01893 535 ProSiteProfiles Ankyrin repeat region circular profile. 205 231 - -
Rops5g01893 535 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Rops5g01893 535 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Rops5g01893 535 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Rops5g01893 535 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 145 354 - -
Rops5g01893 535 Pfam Ankyrin repeats (many copies) 403 446 IPR002110 GO:0005515
Rops5g01893 535 Pfam Ankyrin repeats (many copies) 242 292 IPR002110 GO:0005515
Rops5g01893 535 ProSiteProfiles Ankyrin repeat region circular profile. 172 203 - -
Rops5g01893 535 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Rops5g01893 535 Gene3D - 237 309 IPR036770 -
Rops5g01893 535 Gene3D - 360 429 IPR036770 -
Rops5g01893 535 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Rops5g01893 535 PRINTS Ankyrin repeat signature 441 455 IPR002110 GO:0005515
Rops5g01893 535 SMART ANK_2a 305 334 IPR002110 GO:0005515
Rops5g01893 535 SMART ANK_2a 172 201 IPR002110 GO:0005515
Rops5g01893 535 SMART ANK_2a 238 267 IPR002110 GO:0005515
Rops5g01893 535 SMART ANK_2a 205 234 IPR002110 GO:0005515
Rops5g01893 535 SMART ANK_2a 392 421 IPR002110 GO:0005515
Rops5g01893 535 SMART ANK_2a 425 454 IPR002110 GO:0005515
Rops5g01893 535 SMART ANK_2a 338 366 IPR002110 GO:0005515
Rops5g01893 535 SMART ANK_2a 271 300 IPR002110 GO:0005515
Rops5g01893 535 SMART ANK_2a 458 487 IPR002110 GO:0005515
Rops5g01893 535 Gene3D Immunoglobulins 1 125 IPR013783 -
Rops5g01893 535 ProSiteProfiles Ankyrin repeat region circular profile. 238 267 - -
Rops5g01893 535 Gene3D - 310 359 IPR036770 -
Rops5g01893 535 Gene3D - 430 480 IPR036770 -
Rops5g01893 535 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Rops5g01893 535 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Rops5g01893 535 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Rops5g01893 535 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Rops5g01893 535 SUPERFAMILY PapD-like 2 150 IPR008962 -
Rops5g01893 535 Pfam Ankyrin repeats (3 copies) 167 232 IPR002110 GO:0005515
Rops5g01893 535 Pfam Ankyrin repeats (3 copies) 299 358 IPR002110 GO:0005515
Rops5g01893 535 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Rops5g01893 535 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Rops5g01893 535 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Rops5g01893 535 SUPERFAMILY Ankyrin repeat 166 494 IPR036770 -
Rops5g01893 535 ProSiteProfiles Ankyrin repeat region circular profile. 305 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01893 Rops-Chr5 40078238 40079845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01893 363 468 Ion Channels AT4G32500 32.075 3.51e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01893 - - gmx:100782444 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02520 8 57723774 57725354 Rops5g01893 5 40078238 40079845 PCT