Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops5g01893 | ATGGACAGGCTCATAAGGTTAGACCCATCAAACATAGTCCTAATAAGAGTTGAACAAGGGCAAAAGTGCCATGGCAAGATCACCTTACGCAATGTCATGTACACTATGCCAGTGGCATTTAGGCTTCAACCATTGATCAAGACACGTTACACAGTGAAGCCTCAATCAGGGATCATATCCCCTTTAGCCACAGTCACTATAGAGATAACTTATAATCTACCACCAGGCTATAATCTCCCTCACACTTTTCCTCACTCAGATGATTCATTCCTTCTTCACAGTGTCTTGGCTCCTGGTGCAGCCATCAAAGAACCTTCCTCCATGTTTGATGCTGTCCCAATTGACTGGTTCACCACTAAAAAGAAGCAAGTCTTCATTGACAGTGGCATCAAAATCATGTTTGTTGGGTCACAGATTCTGGCTCAATTGGTTGAAGATGGTTCAATGGATGACATAAGAGAGGTACTAGAAAGAAGTGACCAATCATGGAAGGCTGTGAATTCCACAGACCCACAAGGCCAAACACTACTTCACATGGCAATTTCAAAAGCAAGAGCTGATCTGGTTCAGTTACTCCTTGAATTTGAGCCTAACATAGAAATTCCAAACTGTTCTGGCTCAACCCCACTTGAGGCTGCATCTTCTTCTGGTGAAGCCTTAATTGTTGAGCTCCTTTTAGCTCACAAGGCCAACACAGAAAGATCAGAATCATCCATGTTTGGACCAATCCATTATGCTGCAAAAGAAGGACACATGGAAGTTCTAAGGCTTCTCTTACTCAAAGGTGCAAAAGTTAATGCACTCACAAAAGATGGCAACACAGCCTTGCACCTTGCTGTTGAAGAACGAAGAAGAGATTGTGCTAGGCTCCTACTAGCAAATGGAGCCAAAACAGATGTTAGAAACACAAGAGAAGGTGACACCCCTTTACACATAGCATCAACCATAGGAGATGAAAACATGGTAAAGCTCTTGCTTCAAAAGGGTGCTATCAAAGACGTGAGAAATAAACAAGGGAAAACAGCATATGATGTTGCAGCAGAGAATGGCCATGCACGTCTCTTTGATGCACTTCGTTTAGGTGACAACTTGTGTGTTGCAGCTAGAAAAGGTGAAGTGAGGACAATCCAGAAGGTTCTAGAGAATGGTGCAGCCATCAATGGAAGGGACCAAAATGGATGGACAGCACTGCATAGAGCCTCATTCAAAGGGAGAATGGAAGCAGTTCGTGTTCTTGTTGAGAAAGGGATTGATTTGGATGCAAAGGATGAAGATGGGTACACTGCATTGCACTGTGCAGTTGAATCAGGACATGCAGATGTGACAGAGTTTTTGGTGAAGAAAGGTGCTGATGTTGAAGCAAGAACCAACAAGGGTGTGAGTGCATTGCAAATAGCTGAGTCATTGCACTATGTGGGGATCACAAGGATACTTGTTAATGGTGGAGCTAGTAGGGAAAGTTTGAGTCAAATACCAGCATCACCTGCTAAGATTCCATTTGGTACTAAAATGGAAGAAGTTGGGGGTTTGATGAAGAAGAAGAAGATGGGTATAACCAGAGTGCTAAGGGGTAGCTTTGATCGTTCAATGGCTTTGGCTGTGCTCTAA | 1608 | 0.4335 | MDRLIRLDPSNIVLIRVEQGQKCHGKITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATVTIEITYNLPPGYNLPHTFPHSDDSFLLHSVLAPGAAIKEPSSMFDAVPIDWFTTKKKQVFIDSGIKIMFVGSQILAQLVEDGSMDDIREVLERSDQSWKAVNSTDPQGQTLLHMAISKARADLVQLLLEFEPNIEIPNCSGSTPLEAASSSGEALIVELLLAHKANTERSESSMFGPIHYAAKEGHMEVLRLLLLKGAKVNALTKDGNTALHLAVEERRRDCARLLLANGAKTDVRNTREGDTPLHIASTIGDENMVKLLLQKGAIKDVRNKQGKTAYDVAAENGHARLFDALRLGDNLCVAARKGEVRTIQKVLENGAAINGRDQNGWTALHRASFKGRMEAVRVLVEKGIDLDAKDEDGYTALHCAVESGHADVTEFLVKKGADVEARTNKGVSALQIAESLHYVGITRILVNGGASRESLSQIPASPAKIPFGTKMEEVGGLMKKKKMGITRVLRGSFDRSMALAVL* | 536 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops5g01893 | 535 | Gene3D | - | 129 | 236 | IPR036770 | - | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat region circular profile. | 392 | 424 | - | - | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat region circular profile. | 205 | 231 | - | - | |
Rops5g01893 | 535 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 4 | 135 | IPR000535 | - | |
Rops5g01893 | 535 | Pfam | MSP (Major sperm protein) domain | 5 | 108 | IPR000535 | - | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat profile. | 271 | 303 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | PANTHER | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED | 145 | 354 | - | - | |
Rops5g01893 | 535 | Pfam | Ankyrin repeats (many copies) | 403 | 446 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | Pfam | Ankyrin repeats (many copies) | 242 | 292 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat region circular profile. | 172 | 203 | - | - | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat profile. | 425 | 457 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | Gene3D | - | 237 | 309 | IPR036770 | - | |
Rops5g01893 | 535 | Gene3D | - | 360 | 429 | IPR036770 | - | |
Rops5g01893 | 535 | PRINTS | Ankyrin repeat signature | 306 | 321 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | PRINTS | Ankyrin repeat signature | 441 | 455 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | SMART | ANK_2a | 305 | 334 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | SMART | ANK_2a | 172 | 201 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | SMART | ANK_2a | 238 | 267 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | SMART | ANK_2a | 205 | 234 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | SMART | ANK_2a | 392 | 421 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | SMART | ANK_2a | 425 | 454 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | SMART | ANK_2a | 338 | 366 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | SMART | ANK_2a | 271 | 300 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | SMART | ANK_2a | 458 | 487 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | Gene3D | Immunoglobulins | 1 | 125 | IPR013783 | - | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat region circular profile. | 238 | 267 | - | - | |
Rops5g01893 | 535 | Gene3D | - | 310 | 359 | IPR036770 | - | |
Rops5g01893 | 535 | Gene3D | - | 430 | 480 | IPR036770 | - | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat profile. | 205 | 237 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat profile. | 238 | 270 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat region circular profile. | 271 | 302 | - | - | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat profile. | 172 | 204 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | SUPERFAMILY | PapD-like | 2 | 150 | IPR008962 | - | |
Rops5g01893 | 535 | Pfam | Ankyrin repeats (3 copies) | 167 | 232 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | Pfam | Ankyrin repeats (3 copies) | 299 | 358 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat profile. | 392 | 424 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat region circular profile. | 425 | 457 | - | - | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat profile. | 305 | 337 | IPR002110 | GO:0005515 | |
Rops5g01893 | 535 | SUPERFAMILY | Ankyrin repeat | 166 | 494 | IPR036770 | - | |
Rops5g01893 | 535 | ProSiteProfiles | Ankyrin repeat region circular profile. | 305 | 337 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops5g01893 | Rops-Chr5 | 40078238 | 40079845 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops5g01893 | 363 | 468 | Ion Channels | AT4G32500 | 32.075 | 3.51e-09 | 57.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops5g01893 | - | - | gmx:100782444 | 815.453 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops8g02520 | 8 | 57723774 | 57725354 | Rops5g01893 | 5 | 40078238 | 40079845 | PCT |