LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops5g01893	ATGGACAGGCTCATAAGGTTAGACCCATCAAACATAGTCCTAATAAGAGTTGAACAAGGGCAAAAGTGCCATGGCAAGATCACCTTACGCAATGTCATGTACACTATGCCAGTGGCATTTAGGCTTCAACCATTGATCAAGACACGTTACACAGTGAAGCCTCAATCAGGGATCATATCCCCTTTAGCCACAGTCACTATAGAGATAACTTATAATCTACCACCAGGCTATAATCTCCCTCACACTTTTCCTCACTCAGATGATTCATTCCTTCTTCACAGTGTCTTGGCTCCTGGTGCAGCCATCAAAGAACCTTCCTCCATGTTTGATGCTGTCCCAATTGACTGGTTCACCACTAAAAAGAAGCAAGTCTTCATTGACAGTGGCATCAAAATCATGTTTGTTGGGTCACAGATTCTGGCTCAATTGGTTGAAGATGGTTCAATGGATGACATAAGAGAGGTACTAGAAAGAAGTGACCAATCATGGAAGGCTGTGAATTCCACAGACCCACAAGGCCAAACACTACTTCACATGGCAATTTCAAAAGCAAGAGCTGATCTGGTTCAGTTACTCCTTGAATTTGAGCCTAACATAGAAATTCCAAACTGTTCTGGCTCAACCCCACTTGAGGCTGCATCTTCTTCTGGTGAAGCCTTAATTGTTGAGCTCCTTTTAGCTCACAAGGCCAACACAGAAAGATCAGAATCATCCATGTTTGGACCAATCCATTATGCTGCAAAAGAAGGACACATGGAAGTTCTAAGGCTTCTCTTACTCAAAGGTGCAAAAGTTAATGCACTCACAAAAGATGGCAACACAGCCTTGCACCTTGCTGTTGAAGAACGAAGAAGAGATTGTGCTAGGCTCCTACTAGCAAATGGAGCCAAAACAGATGTTAGAAACACAAGAGAAGGTGACACCCCTTTACACATAGCATCAACCATAGGAGATGAAAACATGGTAAAGCTCTTGCTTCAAAAGGGTGCTATCAAAGACGTGAGAAATAAACAAGGGAAAACAGCATATGATGTTGCAGCAGAGAATGGCCATGCACGTCTCTTTGATGCACTTCGTTTAGGTGACAACTTGTGTGTTGCAGCTAGAAAAGGTGAAGTGAGGACAATCCAGAAGGTTCTAGAGAATGGTGCAGCCATCAATGGAAGGGACCAAAATGGATGGACAGCACTGCATAGAGCCTCATTCAAAGGGAGAATGGAAGCAGTTCGTGTTCTTGTTGAGAAAGGGATTGATTTGGATGCAAAGGATGAAGATGGGTACACTGCATTGCACTGTGCAGTTGAATCAGGACATGCAGATGTGACAGAGTTTTTGGTGAAGAAAGGTGCTGATGTTGAAGCAAGAACCAACAAGGGTGTGAGTGCATTGCAAATAGCTGAGTCATTGCACTATGTGGGGATCACAAGGATACTTGTTAATGGTGGAGCTAGTAGGGAAAGTTTGAGTCAAATACCAGCATCACCTGCTAAGATTCCATTTGGTACTAAAATGGAAGAAGTTGGGGGTTTGATGAAGAAGAAGAAGATGGGTATAACCAGAGTGCTAAGGGGTAGCTTTGATCGTTCAATGGCTTTGGCTGTGCTCTAA	1608	0.4335	MDRLIRLDPSNIVLIRVEQGQKCHGKITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATVTIEITYNLPPGYNLPHTFPHSDDSFLLHSVLAPGAAIKEPSSMFDAVPIDWFTTKKKQVFIDSGIKIMFVGSQILAQLVEDGSMDDIREVLERSDQSWKAVNSTDPQGQTLLHMAISKARADLVQLLLEFEPNIEIPNCSGSTPLEAASSSGEALIVELLLAHKANTERSESSMFGPIHYAAKEGHMEVLRLLLLKGAKVNALTKDGNTALHLAVEERRRDCARLLLANGAKTDVRNTREGDTPLHIASTIGDENMVKLLLQKGAIKDVRNKQGKTAYDVAAENGHARLFDALRLGDNLCVAARKGEVRTIQKVLENGAAINGRDQNGWTALHRASFKGRMEAVRVLVEKGIDLDAKDEDGYTALHCAVESGHADVTEFLVKKGADVEARTNKGVSALQIAESLHYVGITRILVNGGASRESLSQIPASPAKIPFGTKMEEVGGLMKKKKMGITRVLRGSFDRSMALAVL*	536

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops5g01893	535	Gene3D	-	129	236	IPR036770	-
Rops5g01893	535	ProSiteProfiles	Ankyrin repeat region circular profile.	392	424	-	-
Rops5g01893	535	ProSiteProfiles	Ankyrin repeat region circular profile.	205	231	-	-
Rops5g01893	535	ProSiteProfiles	Major sperm protein (MSP) domain profile.	4	135	IPR000535	-
Rops5g01893	535	Pfam	MSP (Major sperm protein) domain	5	108	IPR000535	-
Rops5g01893	535	ProSiteProfiles	Ankyrin repeat profile.	271	303	IPR002110	GO:0005515
Rops5g01893	535	PANTHER	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED	145	354	-	-
Rops5g01893	535	Pfam	Ankyrin repeats (many copies)	403	446	IPR002110	GO:0005515
Rops5g01893	535	Pfam	Ankyrin repeats (many copies)	242	292	IPR002110	GO:0005515
Rops5g01893	535	ProSiteProfiles	Ankyrin repeat region circular profile.	172	203	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops5g01893	Rops-Chr5	40078238	40079845	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops5g01893	363	468	Ion Channels	AT4G32500	32.075	3.51e-09	57.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops5g01893	-		-	gmx:100782444	815.453

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops8g02520	8	57723774	57725354	Rops5g01893	5	40078238	40079845	PCT

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