Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01881 ATGGCTGATTCTCAAGGTGGAAGGCGTGGTAAAGGGACATCTTCGAAGCGTGCCACTTCATCATCAACACAAGAGGCAGCAGCTTCATCATCATCTTCTTCTTCTATAGCACCATGTGGGGCTTGCAAGTTCTTGAGAAGAAGGTGTAGTGATGGATGCATCTTTGCACCTCACTTTGGTTCTGATCAAGGTGCAGCTAAGTTTGCGGCTGTGCATAAGGTGTTTGGTGCTAGCAATGTGTCGAAGTTGTTGTTGAATATTCCGGTGAGCCACCGCCATGAAGCGGCGGCGACTATATCGTATGAGGCTCAGGCAAGGCTAGCTGATCCGGTTTTTGGTTGTGTGTCCACCATTCTTGCTTTACAACAACAGGTGGCATCTTTGCAAGCAGAGCTGGCTATGATGCAATCACAGCTAATAAATAGCAGGTTTGCTTATGCAAATGCTCTTCAGAATACACCGCAGCAGCATCAACAACTTTTTCAACAGCCAAACACCAATATAGCTCTGCAACCAACATACTCAAACAATTCATCTGCTTCAACAACTAACCTTATGAACTTGAGCAACAACTTCAACCCTGGTTTCAACCTTGCAATGGATACAGCACCTTCATCACACAGTTTAGAGCCTCATCAATTTTCTCAGTTGTCTCAATATGAGGAAGAGGATGAACAAGAAAGTGGGATTCCGCATGTCTTCAACCACCGTTAA 714 0.451 MADSQGGRRGKGTSSKRATSSSTQEAAASSSSSSSIAPCGACKFLRRRCSDGCIFAPHFGSDQGAAKFAAVHKVFGASNVSKLLLNIPVSHRHEAAATISYEAQARLADPVFGCVSTILALQQQVASLQAELAMMQSQLINSRFAYANALQNTPQQHQQLFQQPNTNIALQPTYSNNSSASTTNLMNLSNNFNPGFNLAMDTAPSSHSLEPHQFSQLSQYEEEDEQESGIPHVFNHR* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01881 237 MobiDBLite consensus disorder prediction 1 37 - -
Rops5g01881 237 ProSiteProfiles LOB domain profile. 37 139 IPR004883 -
Rops5g01881 237 MobiDBLite consensus disorder prediction 199 216 - -
Rops5g01881 237 MobiDBLite consensus disorder prediction 199 237 - -
Rops5g01881 237 MobiDBLite consensus disorder prediction 8 37 - -
Rops5g01881 237 Coils Coil 118 138 - -
Rops5g01881 237 Pfam Lateral organ boundaries (LOB) domain 38 136 IPR004883 -
Rops5g01881 237 PANTHER LOB DOMAIN CONTAINING PROTEIN 34 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01881 Rops-Chr5 39736551 39738108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01881 1 229 AS2 family AT3G03760 55.906 3.40e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops5g01881 LOB 3.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01881 - - aprc:113866578 274.248