Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01880 ATGGCAGAAGAAAGTGTTCCCAAAGAGCCTTGCAAGAACCCAAAGGAGTGTCTTCTGATTGAACACGCAGAACTGATCCTACCATGGCTAACTCCACAAGAACTCGCCAACATCTCCATCACTTGCAAAACCCTACACAAAGTTTCCCACTCCATCACTCTTCTCCGTTCCTCCGACGCTTCTAGAACCTTCGAGAATTTCCAAGTTCCCTTTCTCAACACCCTCGACCACCACCCTTACTCCCATTTCCTCTACACCCCTACCCTTCTCCTCCCCTCTCACCACAACCTCCTTCGCCAACGCTGGGGTGGCAGTTCTGTAATTTCCCCTTCGCTACCGAGTCAGGAGGCGGAATCGGTGAGTCTGGTGAACAAGTCGGGGTGCGAATGTAGAGGGGGATGTGGGGATGATGATGAGGGTTTGGGGTGTCAGTGTTTGGGGTTGGATGGGTTTGATGACGTGGGGAGAGAATGTGGACCGGGTTGTTTGTGTGGACCGGAGTGTGGGAACCGGTCGAGCCCGAAGGGGGTTGCGGTTCGGGTGAAGATTGTGAGGGATGGAAGGAAAGGGTGGGGTTTGTTTGCTGATCAGTTCATTCCGAAAGGGAAGTTCCTGTTTGAGTATGCAGGTGAACTATTGACAACCAAGGAAGCACAAAGGAGACAGCAACATTATGATGAACTAGCATCGCGTGGTGGTTTCTCTTCTGCTCTTTTAGTTGTAAGGGAGCATCTTCCATCTGGAAAGGCATGTTTAAGATTAAACATCGATGCCACAAGAATAGGAAATGTTGCAAGGTTTGTGAATCATTCATGTGATGGTGGTAATTTAAGCACAAAGCTAGTTAGAAGTTCAGGAGCTTTGTTTCCTCGCCTTTGCTTCTATGCTTTGAAGGATATCCAAAAAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGCTCAATGGATTGCCATGCTTTTGCAATAGCCCTTCTTGCTTTGGAACATTGCCCTCTGAAGACACTTGA 1017 0.4818 MAEESVPKEPCKNPKECLLIEHAELILPWLTPQELANISITCKTLHKVSHSITLLRSSDASRTFENFQVPFLNTLDHHPYSHFLYTPTLLLPSHHNLLRQRWGGSSVISPSLPSQEAESVSLVNKSGCECRGGCGDDDEGLGCQCLGLDGFDDVGRECGPGCLCGPECGNRSSPKGVAVRVKIVRDGRKGWGLFADQFIPKGKFLFEYAGELLTTKEAQRRQQHYDELASRGGFSSALLVVREHLPSGKACLRLNIDATRIGNVARFVNHSCDGGNLSTKLVRSSGALFPRLCFYALKDIQKDEELTFSYGEIRKRLNGLPCFCNSPSCFGTLPSEDT* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01880 338 Pfam SET domain 190 311 IPR001214 GO:0005515
Rops5g01880 338 SUPERFAMILY SET domain 67 331 IPR046341 -
Rops5g01880 338 Gene3D SET domain 51 333 IPR046341 -
Rops5g01880 338 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H 113 333 - -
Rops5g01880 338 ProSiteProfiles Post-SET domain profile. 318 334 IPR003616 -
Rops5g01880 338 SMART set_7 179 317 IPR001214 GO:0005515
Rops5g01880 338 ProSiteProfiles SET domain profile. 179 311 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01880 Rops-Chr5 39722987 39726814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01880 49 329 EF-hand Containing Proteins AT5G13960 27.245 3.11e-22 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops5g01880 SET 2.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01880 K11433 - gmx:100786871 476.092