Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01869 ATGGTTTATTGTGATCATTGTTGGAAGAACGTTGCTGGGATACGAGTTGATGATGGTCCTTTATGTTGTAGCGAATGTGGGAAGGTTTTGGAAGACTGCCATTTTTCCCAGGAGCCCACCTTTGTGAAAAACTCCTCTGGGCAGAGCAAGTTATCGGGTCATTATGTAAGGACGATTCAAAGTGAGTTCTCTGCTTCACGCCAAAGGACTTTAGATAGAGCTTATGATGATATCAAATTTTTAAGTTTCAACCTTGGAGTGAATGATGATAATATGGCCAACCAAGCTTTGGCCTTTTATAGAATAGCACTTGAGCGAAATTTCACTAGGGGACGTAGATCAGAACAAGTACAGGCTGCTTGTCTCTACATTGCATTTCGGGAAAATAATAAACCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAAATGTTTATGTGCTAGGTGCAGTTTTTTTGCAACTTTGTAAAGTATTAAGGCTCGAAGAGCATCCAATTGTTCAAAAACCTGTTGATCCCAGTCTTTTTATTTATAAATTTACGAATAGTTTGTTAAAGCAAAGGAATGTGCTTGTCTCTGAAACTGCACTAAGTATTATTGCCAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAGCCTAGCGGATTATGTGGTGCGGCATTATACATCTCTGCTCTCGCACATGGTTTTAAGTGCAATAAGTCAGATATTCTAAGAATCGTCCATGTATGTGAAGCAACATTGACTAAGCGATTGGTTGAGTTTGAGAATACAGAGTCTGCTAGCTTGACAATTGAGGAGTTGAACATGATGGCAAAAGAGCGTGAAAAGGATCCAATTAAAATACCAAATGGTGAACCGAACAAAGGTACTTCAAAGGATCTACTATGTGAACACAAGGATAGTGCTGTGCCCTATTTTGCACTTGGGTTATGTGAAACTTGTTACAAGGAATTTCATAAACTCTCTGGTGGACTTGATGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAGAGAATGATCAAATCACATGCTGAGGAAAATGCTGATAAATCAGATGATTTGATGAAAGCATCAAATGGTGCACACGAGAGCCAAATAGAAGAATTAGACGCCTCTGAGCTAAAAAGTATTGGGGCTAAAGAACATGTGGCCATTAAAGATGGTGAGCACGATGAGTCACATAGAGAAGATGATATGAATGCAGAAACTGACGATGAATCAGGAAGTTTCTCTGATATTGATGATCAGGAGGTTGATGGCTACCTTCACAATGAAGAGGAAAAGCATTACAAGAAGATTATATGGGAACATATGAATCGAGAGTATCTTGAGGAACAAGCAGCCAAGGAAGCAGCCGCAGCAGCTGCTAAGGAAGCTTTTGAGGCGAACTGTTCTGAGGAATTGCTTGCAGCTAGAGAACTTGCTGCATCTGTTGGCACAGCTGTGGCAAAATCCAGAAAGGAAATGAGACAGAAACGAGCTCAAGAGGCAAAAAACTTGGGTCCTGCTCAATCTGCTGCAGAGGCCACTCGCCAAATGTTGAGAACAAAGAGGCTCAGCTCCAAAGTCAATTATGATCGCTTGGAAAAATTATTTGATGAACCTGTGGCTCCAGAGAATCCCAAGAAAGTAAAATTTGATCTGCCCTCTGATGATAATCATGATAATTTTGAGTCAAAGTTAGAGGACAAAATAAAGAATGATGATGAACTGGGATCAGTGGAAGAATTTGAGGATGGTGATATGGATGGAGAATATGAAAATACTTTGTATCAAGAAAATGCATATGAGACATTTGACTATGAGGATGCTGGTTATAGCTATGATGATTTTTAG 1854 0.4008 MVYCDHCWKNVAGIRVDDGPLCCSECGKVLEDCHFSQEPTFVKNSSGQSKLSGHYVRTIQSEFSASRQRTLDRAYDDIKFLSFNLGVNDDNMANQALAFYRIALERNFTRGRRSEQVQAACLYIAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIYKFTNSLLKQRNVLVSETALSIIASMKRDWMQTGRKPSGLCGAALYISALAHGFKCNKSDILRIVHVCEATLTKRLVEFENTESASLTIEELNMMAKEREKDPIKIPNGEPNKGTSKDLLCEHKDSAVPYFALGLCETCYKEFHKLSGGLDGGLDPPAFQRAERERMIKSHAEENADKSDDLMKASNGAHESQIEELDASELKSIGAKEHVAIKDGEHDESHREDDMNAETDDESGSFSDIDDQEVDGYLHNEEEKHYKKIIWEHMNREYLEEQAAKEAAAAAAKEAFEANCSEELLAARELAASVGTAVAKSRKEMRQKRAQEAKNLGPAQSAAEATRQMLRTKRLSSKVNYDRLEKLFDEPVAPENPKKVKFDLPSDDNHDNFESKLEDKIKNDDELGSVEEFEDGDMDGEYENTLYQENAYETFDYEDAGYSYDDF* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01869 617 FunFam Cyclin/Brf1-like TBP-binding protein 409 459 - -
Rops5g01869 617 MobiDBLite consensus disorder prediction 392 421 - -
Rops5g01869 617 MobiDBLite consensus disorder prediction 349 379 - -
Rops5g01869 617 MobiDBLite consensus disorder prediction 492 518 - -
Rops5g01869 617 SUPERFAMILY Cyclin-like 75 163 IPR036915 -
Rops5g01869 617 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Rops5g01869 617 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Rops5g01869 617 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Rops5g01869 617 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Rops5g01869 617 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Rops5g01869 617 Gene3D - 173 265 - -
Rops5g01869 617 Gene3D - 64 165 - -
Rops5g01869 617 MobiDBLite consensus disorder prediction 540 564 - -
Rops5g01869 617 SMART cyclin_7 176 259 IPR013763 -
Rops5g01869 617 SMART cyclin_7 76 158 IPR013763 -
Rops5g01869 617 MobiDBLite consensus disorder prediction 349 363 - -
Rops5g01869 617 FunFam Transcription factor IIIB subunit 173 262 - -
Rops5g01869 617 SUPERFAMILY Cyclin-like 172 269 IPR036915 -
Rops5g01869 617 Gene3D Single helix bin 409 459 - -
Rops5g01869 617 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Rops5g01869 617 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Rops5g01869 617 MobiDBLite consensus disorder prediction 392 407 - -
Rops5g01869 617 Pfam Brf1-like TBP-binding domain 417 539 IPR011665 -
Rops5g01869 617 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 529 IPR000812 GO:0006352|GO:0070897
Rops5g01869 617 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01869 Rops-Chr5 39346814 39367030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01869 1 523 Inorganic Solute Cotransporters AT2G01280 43.371 4.15e-114 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01869 K15196 - gmx:100817609 781.171