Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01867 ATGATGTACCAAAGATTAAACCAACCCCAAAAGGATGTATTGGCTTACGAGAAGGCAGAAAGATCTCAAGATCCTAGTGAACTGCTTTCATGCGCTGGAAATGAGATGGGTTCTATAATAAGAGATGGTGATTCATCCCTGGTTGAGCTTCCCATAGCATGGGCCGGGCTTGCCATGGTTCACGAGGCTCAGCATGAGATAGCAACAACATACGAAAGTGAACAACATGGGCTGACAGAAATTGAAGAGCGTGTTGTTTGCAGTCTAAAGCAAGCCATAGCAGAAGATCTAGATGATGTTGTGCAGTGGCACCAACTTGGCGTTCATAGTCTTTGTGCTCGGCAATTCAAAACAAAAAACTTCAAAGTTGCTATTGTCTATGACAAGGGTTGCAGCTATGCATGGTCTAACCTCGGTGTCTCGCTGCAACTATCAGAAGGACCATCACAAGCTGAAGAAGTATATAAGCAAGCTTTGTCTTTGGCAACAACACAACAAGCACATGTTATGCGAGAGGGCAATAAGCGGAACGTGGAAAAACTGTGTAGGAGTTGGCATGACCCTCTCATCCCCAAGGGAAAGCTGGCATGTGCTTCATGGAAGGTCTATGGAGAACCTCGTGGCTCCTCACATTCGACCATGTTTGGGCTCATTATGTGGCTATTTTCAGAACCTTATATAGGAAGCATTGTAACCATGTCGTCGAAGAGAAAGGTTAGGGAGCCAAAGGAGGAAAACGTGACTTTGGGTCCTGTTGTTAGAGATGGTGAACTTGTGTTTGTTGTGGCTCGTATCTTTGCATCGTTCAACGACACTTTCACTCATGTCACTGATTTGTCTGGAAGGGAAACCCTTGTCTGCATCACTGGTGGATGA 876 0.4532 MMYQRLNQPQKDVLAYEKAERSQDPSELLSCAGNEMGSIIRDGDSSLVELPIAWAGLAMVHEAQHEIATTYESEQHGLTEIEERVVCSLKQAIAEDLDDVVQWHQLGVHSLCARQFKTKNFKVAIVYDKGCSYAWSNLGVSLQLSEGPSQAEEVYKQALSLATTQQAHVMREGNKRNVEKLCRSWHDPLIPKGKLACASWKVYGEPRGSSHSTMFGLIMWLFSEPYIGSIVTMSSKRKVREPKEENVTLGPVVRDGELVFVVARIFASFNDTFTHVTDLSGRETLVCITGG* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01867 291 Gene3D Ribosomal protein S11 233 291 IPR036967 GO:0003735|GO:0005840|GO:0006412
Rops5g01867 291 SUPERFAMILY TPR-like 89 165 IPR011990 GO:0005515
Rops5g01867 291 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 19 173 - -
Rops5g01867 291 Gene3D Tetratricopeptide repeat domain 50 174 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01867 Rops-Chr5 39238254 39239434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01867 235 291 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 78.947 1.07e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01867 - - gmx:100786537 253.832