Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01854 ATGAGTTCACTACACTTCAACAGTGGTGGTTATGGTTTCTGTGGGAACATGAATACTTTCCCTTCAGCTCCTGTTCCTTCTTCTTTTCTGGGTCCTCAACCTCCTGTGTGTAACACTTTTGCTGTGATGGGTCATGGTGGTGACACAGAGTCTGATATACCCTTTCAGATTTTGAGCCCTTCAGTGTTCAATCCCCATGAGAACATGGTGACAAGGAGAACCAATGATGAAGGGGATGATGGGTGTTTTGGGGATAAGAACAAGAGTTTGTCTTTGAAACTTGGTGAGGAAGCTGAAGCTAACAGTTCTTCCTCAGGGAAAACTGGGCACACTAAGCTTTGTGTTAGAGGTCACTGGAGACCAGCTGAAGATGCCAAGCTTAAAGACCTTGTAGCTCAATTTGGTCCTCAAAACTGGAACTCCATATCAGAACATCTAGAAGGAAGATCAGGCAAAAGTTGCAGATTGAGGTGGTTTAATCAGTTAGATCCTAGAATTAACAGAACAGCTTTCACTGAGGAAGAAGAGGAGAAGCTCTTGGCTGCTCATAAAATGTATGGTAACAAATGGGCTATGATTTCTAGACTCTTTCCTGGTAGGACAGACAATGCAGTGAAGAACCATTGGCATGTAATCATGGCTAGGAGGCAAAGGGAACAATCATGTCTCTATAGAAGGAGAAAGCCCACATTTCAAAGCATTCCACCAAAGGGTTTAAATTTGACTTTATCAAACAATGCAGCCAGTGAATCAACCATCTCAAGCACCATTGATGAATCTGCCTCAACATGCACCAACCTCTCCCTCACTCCCTCTTCTGCCAAACCAATTCCTAGGCCTTTTCACAACAATCTGATTCATGTTCAGAATTATCAAGCCTATAGATCACTAATGGGCTTATCTGTAGGAAGCAGGGTACCAACCGGGGATGTGGGTTTTGACAAGTTTTTCAGTGCTTGGAACGGTTCATGTGACCATGGTCACATGGGAAAGCTTATATGTGGGGACCAATCCAATTACTCAGATTCAAACTCAGAAGTTTCAGTATCTGAGTCAGTTGCCACCAACAGGACCAATCTATCAAATTTTGGGGAAAGTGAAAATGTGGGGGATAAGATTAACATGTCTTTTATTGACTTTCTTGGAGTAGGTGCTACATAG 1161 0.4289 MSSLHFNSGGYGFCGNMNTFPSAPVPSSFLGPQPPVCNTFAVMGHGGDTESDIPFQILSPSVFNPHENMVTRRTNDEGDDGCFGDKNKSLSLKLGEEAEANSSSSGKTGHTKLCVRGHWRPAEDAKLKDLVAQFGPQNWNSISEHLEGRSGKSCRLRWFNQLDPRINRTAFTEEEEEKLLAAHKMYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREQSCLYRRRKPTFQSIPPKGLNLTLSNNAASESTISSTIDESASTCTNLSLTPSSAKPIPRPFHNNLIHVQNYQAYRSLMGLSVGSRVPTGDVGFDKFFSAWNGSCDHGHMGKLICGDQSNYSDSNSEVSVSESVATNRTNLSNFGESENVGDKINMSFIDFLGVGAT* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01854 386 PANTHER MYB PROTEIN-RELATED 116 266 - -
Rops5g01854 386 CDD SANT 119 160 IPR001005 -
Rops5g01854 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 162 IPR017930 -
Rops5g01854 386 SMART sant 167 215 IPR001005 -
Rops5g01854 386 SMART sant 115 164 IPR001005 -
Rops5g01854 386 Pfam Myb-like DNA-binding domain 116 162 IPR001005 -
Rops5g01854 386 Pfam Myb-like DNA-binding domain 168 211 IPR001005 -
Rops5g01854 386 CDD SANT 178 210 IPR001005 -
Rops5g01854 386 Gene3D - 115 167 - -
Rops5g01854 386 Gene3D - 169 228 - -
Rops5g01854 386 FunFam MYB transcription factor 116 167 - -
Rops5g01854 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 217 IPR017930 -
Rops5g01854 386 ProSiteProfiles Myb-like domain profile. 163 213 IPR001005 -
Rops5g01854 386 SUPERFAMILY Homeodomain-like 115 209 IPR009057 -
Rops5g01854 386 ProSiteProfiles Myb-like domain profile. 116 162 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01854 Rops-Chr5 38895300 38897521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01854 97 281 MYB Transcription Factor Family AT5G17800 61.576 1.60e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g01854 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01854 K09422 - jre:109000849 398.282