Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01853 ATGGAACAGTACGAGATTCTAGAAGAGATTGGCAAAGGTTCATTTGCTTATGCTCTGCTTATCAGGCACAAGCACGAAAACAAAAAGTATGTCCTGAAGAAGATCCGCCTTGCCCGCCAGACTGACAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATCTCTAAAGTTCGAAATCCATTTATTGTTGAGTATAAAGATTCCTGGGTAGAAAAGGGTTTTGTGTGTATCATCATTGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATTAAAAAGGCTAATGGTGTTCATTTTCCTGAAGAGAAGCTCTATATTTGGTCTTTGGGATGTTGTGTATATGAAATGGCTGCCCACAAGCCAGCTTTTAAGGCTCTTGATATGCAAACATTGATTAACAAAATAAACAAGTCTTTAGTGGCTCCACTACCAACCGTGTATTCTGGTTCTTTTCGAAGCCTTGTGAAGAGTATGCTACAGAAAAATCCAGAGCTTCGGCCAAGTGCTGCAGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCATAAAATTCACCTAAAACTAAATAGCCCCAGAAGAAATACTTTTCCATTCCAATGGCCTCACTCAAGCTATGCAAGGAGAACTCGGTTTGCAGAGCCAAAATCTGTTTCCACTCTTACTGACAGAAGACATAAACGGTTGTCATTCAGTAATGACAGGGCCTTGAATCCTAGTATTTCTGGGACTGAACTAGGTTCTCTGTGTTCTACTCAAAGAGCACGAGGATTCTCTGCTTGGCTGTGTCCGTGA 798 0.4185 MEQYEILEEIGKGSFAYALLIRHKHENKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGFVCIIIGYCEGGDMAEAIKKANGVHFPEEKLYIWSLGCCVYEMAAHKPAFKALDMQTLINKINKSLVAPLPTVYSGSFRSLVKSMLQKNPELRPSAAELLNHPHLQPYIHKIHLKLNSPRRNTFPFQWPHSSYARRTRFAEPKSVSTLTDRRHKRLSFSNDRALNPSISGTELGSLCSTQRARGFSAWLCP* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01853 265 SMART serkin_6 4 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01853 265 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Rops5g01853 265 FunFam Probable serine/threonine-protein kinase nek1 1 82 - -
Rops5g01853 265 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 105 - -
Rops5g01853 265 Gene3D Transferase(Phosphotransferase) domain 1 90 237 - -
Rops5g01853 265 SUPERFAMILY Protein kinase-like (PK-like) 1 241 IPR011009 -
Rops5g01853 265 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Rops5g01853 265 ProSiteProfiles Protein kinase domain profile. 4 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01853 265 Pfam Protein kinase domain 104 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01853 265 Pfam Protein kinase domain 4 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01853 Rops-Chr5 38795309 38808993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01853 107 210 MAP Kinase Kinase Kinase AT1G53570 31.667 5.46e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Rops5g01853 Pkinase 6.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01853 K08857 - cpap:110814726 328.561