Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01852 ATGCATGCGCGAATGGGTCCAGTCAAGAACGATAATGGTGATGATGTAGTAGGGAGTGAAGGTTCCATAACAAAGGGTAAGGCATTGGAGGGAACTTTAGGGTTGGTTGGTGTTTCCAGAGGGAGACTTAATGGTGAGGGGTTTTCAGGGTTAAGGAAGACAAGGCTTGTTGGTCCTGCATGTATTTCGGTGGAAGATCTAGAGAAGTTGGCACTTGGGGAAGTGAATGTTGCAAGGCTCAACATGTGTCACTGTACTAGGAAGCAACACTGTGATGTGGTTAGGAAGATTAAGAAGCTAAATGATAAAAGAGGTTGGGAGTTCGTGGGCTCGGTGAGGATCCGAGAGGGAAGGACCGTGAGAACTTGGTCTATGTTGCCAAGCTGGCTGAGCAAGCTGAATGCTATGTTGAAATGGCACAAGCACGAAAACAAAAAGTATGTCCTGAAGAAGATCCGCCTTGCCCGCCAGACTGACAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATCTCTAAAGTTCGAAATCCATTTATTGTTGAGTATAAAGATTCCTGGGTAGAAAAGGGTTTTGTGTGTATCACCATTGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATTAAAAAGGCTAATGGTGTTCATTTTCCTGAAGAGAAGCTTTGTGACTTTGATCTTGCTAAAATGTTGACATGTGACGATCTTGCTTCCTCGGTTGTGGGGACTCCAAGTTATATGTGCCCAGAGCTCCTTGCTGATATACCCTATGGCTCCAAGTCAGATATTTGGTCTTTGGGATGCTGTGTATATGAAATGGCTGCCCACAAGCCAGCTTTTAAGGCTCTTGATATGCAAACATTGATTAACAAAATAAACAAGTCTTTAGTGGCTCCACAACCAACCGTGTATTCTGGTTCTTTTCGAAGCCTTGTGAAGAGTATGCTGCGGGAAAATCCAGAGCTTCGGCCAAGTGCTGCAGCGTTACTAAATCATCTGCATCTTCAACCTTACATTCATAAAATTCACCTAAAACTAAATAGCCCCAGAAGAAATACTTTTCCATTCCAATGGCCTCACTCAAGCTATGCAAGGAGAACTCGGTTTGCAGAGCCAAAATCTATTTCCACTCTTACTGACAGAAGACATAAACGATTGTCATTCAGTAATGACAGGGCCTTGAATCCTAGTATTTCTGGGACTGAACTAGGTTCTCTGTGTTCTACTCAAAGAGCACGAGGATTCTCTGCTTGGCTGTGTCCGTGA 1266 0.4431 MHARMGPVKNDNGDDVVGSEGSITKGKALEGTLGLVGVSRGRLNGEGFSGLRKTRLVGPACISVEDLEKLALGEVNVARLNMCHCTRKQHCDVVRKIKKLNDKRGWEFVGSVRIREGRTVRTWSMLPSWLSKLNAMLKWHKHENKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGFVCITIGYCEGGDMAEAIKKANGVHFPEEKLCDFDLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQTLINKINKSLVAPQPTVYSGSFRSLVKSMLRENPELRPSAAALLNHLHLQPYIHKIHLKLNSPRRNTFPFQWPHSSYARRTRFAEPKSISTLTDRRHKRLSFSNDRALNPSISGTELGSLCSTQRARGFSAWLCP* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01852 421 Gene3D - 57 105 IPR040442 -
Rops5g01852 421 Gene3D Transferase(Phosphotransferase) domain 1 210 392 - -
Rops5g01852 421 MobiDBLite consensus disorder prediction 1 22 - -
Rops5g01852 421 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 56 123 IPR015813 GO:0003824
Rops5g01852 421 Gene3D Phosphorylase Kinase; domain 1 134 199 - -
Rops5g01852 421 SUPERFAMILY Protein kinase-like (PK-like) 139 394 IPR011009 -
Rops5g01852 421 Pfam Protein kinase domain 139 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01852 421 Pfam Protein kinase domain 221 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01852 421 Pfam Pyruvate kinase, barrel domain 57 122 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Rops5g01852 421 ProSiteProfiles Protein kinase domain profile. 22 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01852 421 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 221 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01852 Rops-Chr5 38775773 38777487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01852 137 366 MAP Kinase Kinase Kinase AT1G53570 23.693 2.89e-18 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Rops5g01852 Pkinase 5.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01852 K08857 - gmx:100810347 484.567