Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01850 ATGGGAACCAGAAAGGAAGAAGAGAAGAACGAGAAAATTATTAGGGGTCTCATGAAGCTTCCACCTAATCGAAGATGTATCAATTGTAATAGTTTGGGACCGCAGTATGTATGTACAAATTTTTGGACCTTCATTTGCATTACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCAATGGCAAAGTTCACTTCTCAAGAAGTTGATGCTCTTCAAAATGGTGGTAACCAGCGTGCAAGGGAGATGTATTTGAAAAATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAACAGCAATATTGATAAAATAAGGGAGTTTATAAGGAATATATATGTGGATAGAAGATATGCTGGAGCGATGTCTTCTGATAAGCCTCCAAGGGATGCACAGAGCCCTAGAATTCATGAAGATGAGATTAGGCGTGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATAATCAATACGAGGATCGACGATATGGAAAACAAGCATCTGCTCTAACCAGAAAGCCTGGTTCAGATAAAGTTCGCTATGAAGGGAAGATGTCCAGTATTATCTATAGTCCTGGTCGCTTTAGTGATCATGCATATGATGACAGATTTGCAAATGAGGGATCTGGTCCGAGAATTTCTGATTTTTCTGTGTCTAGTGGTGAGCAATTCAAATCAGATGTTCATTCTCCTAAGTTTCATAAAGACATTGGGTTTAGCAGTCCATCCTATCAGCGTTCAGGTTCCAGTTCAAGTGAAGATGTATGGTCTCAAGCAAGAAATACATCTCTGGGAACTAATGCCAATGCCAAGAGAGATGCAGATGGAATTCATCATCCACAGAGAACTACATCATTGCAACCAACAGGCTACGACAATTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCTGTCCAATCTTCAGGATCCCTTCAGAATAAAGCGATAGGAATTGCACAGCCACCTGGTCCTTTGAGATCTGTTAGTTTGGACCTTTCCAAGGCACCGCCGGCATCAGCTTCATCTGTTGATCTTTTTCAATTACTAGAAGCACCTTCTCAAGCTCCACCAGTGGATCTGTTTCAATCATCTGTTTTGTCGACAGCTCCATCTTTCAATGGGAATCAACCTATGCAAACATCCCAACCCTTAGACTTCTTTGCGGATCTGCCTCAGCAGCCTTCTGCAACCTCAAATGAGAAGTCACTGGAGTTATCTGACCCTAAAAATGAAGGTTGGGCAACATTTGATACACCTCAGTGCACATCATCTACTGCACAAGCAGAAATTCCAGCTGCAGTACCTTCAAATGTTGAACCTTTGCAGGATAGATTTGATCCATTTTCAACCTTAAATGCAAATATGCAATTTCTATCTACTGAAATTTCTAGTGTCAGTGCACCTTCTTCAGTTCCATCTAATATATGGCATCATGGTGTGTGGAATGGAGAAGAACAAGTTTCTGTTATGGCAACAAACACTCAACCATGGAATGCATTTGAAGATTCTGGTACCCATCTTCCTGTGGATGCTGTTAGTCAAGGATTACAATTGCATAATTTCCCATCAGCTGATAATCAAATTTTGGGTTTAAGAGCTTCAGAGAACCAGGGACCCAGTAAAGATGGATTGCAAGGCATTGCCCCTCTTGGCGGATTTGATAATCGTGACATTGCATCAAATGGAGATATCCAACCTAATGGAATCAATCATAAATCAACTAATCCATTTGATTATCCCTTTGATTCTGATGTAGATCACAGTAATATGTTCCTTGATATGAGCTCTTTGCAAGCTGCTCTGCCAGATGCCTTGTTGCCAGCCTCCTTCCATAGTGGTATAGCTGAACCATGGCTCCCTCAAAATACAGTGACGCCATATATCTCTTCTGCAGGAGAAGGTGGTTTGTCGTTCATGGCAGTGCAACCGCCAAGTTCTCAATTACAGAACATCCAGACCCAGGAACCAGTTGCTTCGATTGGGGGAAATCCTTTTGCATGA 2016 0.4162 MGTRKEEEKNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFICITCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREMYLKNWDFQRQRLPDNSNIDKIREFIRNIYVDRRYAGAMSSDKPPRDAQSPRIHEDEIRRASSYHSYSQSPPYDNQYEDRRYGKQASALTRKPGSDKVRYEGKMSSIIYSPGRFSDHAYDDRFANEGSGPRISDFSVSSGEQFKSDVHSPKFHKDIGFSSPSYQRSGSSSSEDVWSQARNTSLGTNANAKRDADGIHHPQRTTSLQPTGYDNSGGLVDFFSEPVQSSGSLQNKAIGIAQPPGPLRSVSLDLSKAPPASASSVDLFQLLEAPSQAPPVDLFQSSVLSTAPSFNGNQPMQTSQPLDFFADLPQQPSATSNEKSLELSDPKNEGWATFDTPQCTSSTAQAEIPAAVPSNVEPLQDRFDPFSTLNANMQFLSTEISSVSAPSSVPSNIWHHGVWNGEEQVSVMATNTQPWNAFEDSGTHLPVDAVSQGLQLHNFPSADNQILGLRASENQGPSKDGLQGIAPLGGFDNRDIASNGDIQPNGINHKSTNPFDYPFDSDVDHSNMFLDMSSLQAALPDALLPASFHSGIAEPWLPQNTVTPYISSAGEGGLSFMAVQPPSSQLQNIQTQEPVASIGGNPFA* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01850 671 MobiDBLite consensus disorder prediction 393 408 - -
Rops5g01850 671 MobiDBLite consensus disorder prediction 271 295 - -
Rops5g01850 671 MobiDBLite consensus disorder prediction 144 164 - -
Rops5g01850 671 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Rops5g01850 671 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Rops5g01850 671 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Rops5g01850 671 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Rops5g01850 671 MobiDBLite consensus disorder prediction 393 413 - -
Rops5g01850 671 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Rops5g01850 671 PANTHER ARFGAP/RECO-RELATED 1 671 IPR044820 GO:0005096
Rops5g01850 671 CDD ArfGap_AGFG 11 121 - -
Rops5g01850 671 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Rops5g01850 671 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Rops5g01850 671 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Rops5g01850 671 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01850 Rops-Chr5 38730028 38742312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01850 14 137 C2H2 Transcription Factor Family AT3G07940 32.836 4.02e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01850 K15044 - gmx:100788316 985.326