Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01846 ATGGATCATTACAAGGTTCTAGGATTACACAGAAACGCAACCAAGGAAGAAATCAAAGCAGCGTTCAAGAAATTAGCGTTTCAATTCCACCCAGACAAACATTCCCAATCACCCAAGGCTGTTAGGGACAACGCCACACTTCTATTCAAGCAGGTTTCCGAGGCCTACGAGGTTCTCATGGACGATCGCAAGCGTGCCGATTACAATTCCCGGTGGAATTCCGGCGCCGGCGGCCGGAGCTCGGGTACCGGTGGCTACAACTATTATTATTCTCGATATAGCTATGGATACGGTAGGAGTGGGAGTAGCAACTATGAATATAAATCAAGGTCAGGGTTCAATGCTGGTGGCTTCGCTTCCAAGTTTGAACTCGCTCTTCGGATTTTGACGGCGCGATCTTCTCTTCTCCATCTTAGTTTTGCAGCGGCTATATTAGGTGGGTTAATTGTCATTGATACAAGCGGAGAATCCTTATGGAAGAAGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGCAGTCCATTGAGAAAGCCAAAGCGTATAGAGAAGATAACATGAAGGAACGTCCTTGA 573 0.4607 MDHYKVLGLHRNATKEEIKAAFKKLAFQFHPDKHSQSPKAVRDNATLLFKQVSEAYEVLMDDRKRADYNSRWNSGAGGRSSGTGGYNYYYSRYSYGYGRSGSSNYEYKSRSGFNAGGFASKFELALRILTARSSLLHLSFAAAILGGLIVIDTSGESLWKKQNSGKSFEEAMQSIEKAKAYREDNMKERP* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01846 190 CDD DnaJ 2 61 IPR001623 -
Rops5g01846 190 Pfam DnaJ domain 2 69 IPR001623 -
Rops5g01846 190 FunFam DnaJ domain protein 1 88 - -
Rops5g01846 190 Gene3D DnaJ domain 1 127 IPR036869 -
Rops5g01846 190 SMART dnaj_3 1 64 IPR001623 -
Rops5g01846 190 PRINTS DnaJ domain signature 64 83 IPR001623 -
Rops5g01846 190 PRINTS DnaJ domain signature 44 64 IPR001623 -
Rops5g01846 190 PRINTS DnaJ domain signature 22 37 IPR001623 -
Rops5g01846 190 PRINTS DnaJ domain signature 4 22 IPR001623 -
Rops5g01846 190 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Rops5g01846 190 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
Rops5g01846 190 SUPERFAMILY Chaperone J-domain 1 94 IPR036869 -
Rops5g01846 190 PANTHER CO-CHAPERONE PROTEIN DJLA 4 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01846 Rops-Chr5 38594730 38605830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01846 3 70 C2H2 Transcription Factor Family AT1G74250 39.706 8.60e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01846 - - gmx:100782769 265.388