Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01813 ATGAAAAGCCAAGCATCAGACTTGCCTAGAGGGGCAGATTTCTTCAGGTCAAATGTCCTCAGACTGGTTGCAGGGCTAGAGTCCTTAGATCTAAAGACAGATTGTTGCTATCCAATGGCATCTCAAATCAAATACGATGTCTTCGTTAGTTTTAGAGGCACAGACGTACGCGATTGTTTGCTTAGCCATTTGATAAAGGAAATGCAGCGGAACCAAGTTGATTTCTTCGTGGATAACAGACTTCAAGAAGGAGATGAAATATCAGATGCTCTTCTGAAAGCCATTGAAGAATCACATATTTCTTTGGTCATATTCTCCAAAGACTATGCTTCTTCAAGGTGGTGCTTGGAAGAGCTTGTGAAAATAATTGAATGCATGGACAGGAATAAACAAATTGTGATTCCTGTTTTCTACAAAATAAATCCATCTGATGTAAGGCTCCAAAAAGGGACTTACAAAGATGCATTGGCTAAACATGAAAGAAATGAAGGAAACCTAGACAAGGTGCCAAGTTGGAGATCTGCTTTGAGAAAAGCTGCTAATCTTTCTGGATTTCATTCATCAAACTTTCGAGATGAAGCTGAGCTTATAGAAAAAATTGCCAACCGTTTGGCGTTCAACTTGAATCTTATGGACCAAAGTGGGTTAACAGACCTTGTTGGAATTGAAGAACGGATTGCAGATGTGGAGTCACTATTGCACCAAGGGTCAACAATAGATGTTCGTGTCATTGGGATTTGGGGCATGGGCGGTATCGGTAAGACAACTATTGCAGGTGCAGTATATAACCATCTTTGTTTTGAATATGAAGGATGCTGCTTTATGGCCAACATAACAGAAGAATTAGAGAAACGTGGAATGATTTATCTGAAGAATAAAATTCTCTCTACATTACTAAAGGGAAATGATCTAAATATTGACACACCTATTGGAGTTCCCCCTTATGTTAAGAGAATGCTGAGTCGTAAGAAGGTTCTTCTTGTTCTTGATGATATCAATGATTCAGAACACCTACAAAATTTAGTTGTAGAACTTTGTTTGTTTGGATCTGGTAGCAGAATCATTGTAACAACTAGAGACAAGCAAGTGCTTAGTAACAAAGTTGACAATGACAATATATATGAGGCTAAAGCATTAAGCTCTGATGAAGCTAATAAACTTTTCTATGCAAATGCCTCCAAAGAAAGTTGTCATGACAAGGAGTGGATTGAGCTATCAAAAAGGGTGATTCAATATGCTGATGGAAACCCATTAGCTTTAAAAGCGTTGGGTTCTTCTCTTTGTGGTAAAAGCAAAGAGGAATGGGCAAGCCTATTGCAGAAACTTAAGAACATGCCTCACTCCAAAATTCAAAATGTATTGCGGTTGAGTTATGATAGACTTGATCGAGCAGAGAAGGAAATATTTCTATATATTGCATGTTTTTTTAAAGGATGTGAATATCAACCAATAATATCTCTTCTTGATGCTTGTGGTTTCTCAACAAATATTGGGTTGAAAGTCCTTCAAGACAAAGCCCTTATAATTGAAGCCAAGGACTCAAGGAGATCAATTATATGGATGCATGACTTGATACAAGAAATGGGTCGGGAGATTGTTCGAGAAGAATGTGTTGATTACCCTGGGCAACGCAGTAGGTTATGGGATCCTAATGATATTTGTCAAGTATTGAAAAATAACAAGGGAACTGAAACCATTAAAAGCATAACTCTGAACAGAGCGAATTTGGATGAGCTGTCCTTAGATCCTCAAGTCTTTGCAAGGATGCAACAGTTAAAGTTTTTTGAAGTTACCGGAAGTTATGGCCTTGAGCCAATCCTGTATTTTCCTCAGGGCCTTGAATATTTGCCAAATGACCTACGACTTTTTAGGTGGGATGGTTTTCCTTTGAAATCCTTGCCTCAGTCTTTTTGTGCAGAAAATCTTGTTGAGCTCAAATTGACTTGGAGCCGAGTGGAAAAACTCTGGGATGGGATCCAGAATCTTGAAAATTTAAAGAAAATTGACCTCAGTTATTCCAAATATCTGCTAGAGATCCCAGATTTTTCAAAGGCCTCAAATCTTGAAGAAGTAGAACTATATGGTTGCATAAATTTGCGTAATGTTCATCCGTCTATTTTATCTCTCAACAAGCTTGTGCGATTAAACCTAGAATTTTGCAAAGAGCTTACCAGTCTTCGAGAAGTCTAA 2190 0.3808 MKSQASDLPRGADFFRSNVLRLVAGLESLDLKTDCCYPMASQIKYDVFVSFRGTDVRDCLLSHLIKEMQRNQVDFFVDNRLQEGDEISDALLKAIEESHISLVIFSKDYASSRWCLEELVKIIECMDRNKQIVIPVFYKINPSDVRLQKGTYKDALAKHERNEGNLDKVPSWRSALRKAANLSGFHSSNFRDEAELIEKIANRLAFNLNLMDQSGLTDLVGIEERIADVESLLHQGSTIDVRVIGIWGMGGIGKTTIAGAVYNHLCFEYEGCCFMANITEELEKRGMIYLKNKILSTLLKGNDLNIDTPIGVPPYVKRMLSRKKVLLVLDDINDSEHLQNLVVELCLFGSGSRIIVTTRDKQVLSNKVDNDNIYEAKALSSDEANKLFYANASKESCHDKEWIELSKRVIQYADGNPLALKALGSSLCGKSKEEWASLLQKLKNMPHSKIQNVLRLSYDRLDRAEKEIFLYIACFFKGCEYQPIISLLDACGFSTNIGLKVLQDKALIIEAKDSRRSIIWMHDLIQEMGREIVREECVDYPGQRSRLWDPNDICQVLKNNKGTETIKSITLNRANLDELSLDPQVFARMQQLKFFEVTGSYGLEPILYFPQGLEYLPNDLRLFRWDGFPLKSLPQSFCAENLVELKLTWSRVEKLWDGIQNLENLKKIDLSYSKYLLEIPDFSKASNLEEVELYGCINLRNVHPSILSLNKLVRLNLEFCKELTSLREV* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01813 729 SUPERFAMILY Toll/Interleukin receptor TIR domain 41 185 IPR035897 -
Rops5g01813 729 Gene3D - 42 210 IPR035897 -
Rops5g01813 729 FunFam Disease resistance protein (TIR-NBS-LRR class) 41 209 - -
Rops5g01813 729 Gene3D - 211 373 IPR027417 -
Rops5g01813 729 Gene3D - 378 462 IPR042197 -
Rops5g01813 729 ProSiteProfiles TIR domain profile. 43 208 IPR000157 GO:0007165
Rops5g01813 729 Pfam NB-ARC domain 225 461 IPR002182 GO:0043531
Rops5g01813 729 Pfam TIR domain 44 219 IPR000157 GO:0007165
Rops5g01813 729 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 45 726 IPR044974 GO:0006952
Rops5g01813 729 Gene3D Ribonuclease Inhibitor 549 729 IPR032675 -
Rops5g01813 729 PRINTS Disease resistance protein signature 243 258 - -
Rops5g01813 729 PRINTS Disease resistance protein signature 319 333 - -
Rops5g01813 729 PRINTS Disease resistance protein signature 413 427 - -
Rops5g01813 729 PRINTS Disease resistance protein signature 660 676 - -
Rops5g01813 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 472 IPR027417 -
Rops5g01813 729 SMART till_3 44 182 IPR000157 GO:0007165
Rops5g01813 729 SUPERFAMILY L domain-like 520 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01813 Rops-Chr5 37844366 37855238 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01813 37 726 WRKY Transcription Factor Family AT4G12020 33.238 1.10e-99 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01813 - - gmx:100799103 987.252