Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01809 ATGGAAATGAAGCGGAACCAAGTTGATTTCTTCGTGGATAACAGACTTCAAGAAGGAGATGAAATATCAGATGCTCTTCTGAAAGCCATTGAAGAATCACATATTTCTTTGGTCATATTCTCCAAAGACTATGCTTCTTCAAGGTGGTGCTTGGAAGAGCTTGTGAAAATAATTGAATGCATGGACAGGAATAAACAAATTGTGATTCCTGTTTTCTACAACATAGATCCATCTGATGTAAGGCACCAAAAAGGGACTTACAAAGATGCATTGGCTAAACATGAAAGAAATGAAGGAAACCTAGACAAGGTGCCAAGTTGGAGATCTGCTTTGAGAAAAGCTGCTAATCTTTCTGGATTTCATTCATCAAACTTTCGAGATGAAGCTGAGCTTATAGAAAAAATTGCCAACAGTTTGTCGTTCAACTTGAATCTTATGGACCAAAGTGGGTTAACAGACCTTGTTGGAATTGAAGAACGGATTGCAGATGTGGAGTCATTATTGCGCCAAGGGTCAACAACAGATGTTCGTATCATTGGGATTTGGGGCATGGGCGGTATCGGTAAGACAACTATTGCAGGTGCAGTATATAACCATCTTTGTTTTGAATATGAAGGATGCTGCTTTATGGCCAACATAACAGAAGAATTAGAGAAACGTGGAATGATTTATCTGAAGAATAAAATTCTCTCTACATTACTAAAGGGAAATGATCTAAATATTGACACACCTATTGGAGTTCCCCCTTATGTTAAGAGAAGGCTGGGTCGTAAGAAGGTTCTTCTTGTTCTTGATGATATCAATGATTCAGAACACCTACAAAATTTAGTTGGACCACTTTGTTTGTTTGGATCTGGTAGCAGAATCATTGTAACAACTAGAGACAAGCAAGTGCTTAGTAACAAAGTTGACAATGACAATATATATGAGGCTAAAGCATTAAGCTCTGATGAAGCTAATAAACTTTTCTATGCAAATGCCTCCAAAGAAAGTTGTCATGACAAGGAGTGGATTGAGCTATCAAAAAGGGTGATTCAATATGCTGATGGAAACCCATTAGCTTTAAAAGCGTTGCGTTCTTCTCTTTGTGGTAAAAGCAAAGAGGAATGGGCAAGCCTATTGCAGAAACTTAAGAACATGCCTCACTCCAAAATTCAAAATGTATTGAGGTTGAGTTATGATAGACTTGATCGAGCAGAGAAGGAAATATTTCTATATATTGCATGTTTTTTTAAAGGATATGAATTTCAACCAATAATATCTCTTCTTGATGCTTGTGGTTTCTCAACAAATATTGGGTTGAAAGTCCTTCAAGACAAAGCCCTTATAATTGAAGCCAAGGACTCTGTAAGGAGATCAATTATATGGATGCATGACTTGATACAAGAAATGGGTCGGGAGATTGTTCGAGAAGAATGTGTTGATTACCCTGGGCAACGCAGTAGGTTATGGGATCCTAATGATATTTGTCAAGTATTGAAAAATAACAAGGGAACTGAAACCATTAAAAGCATAACTCTGAACATCTCGAATTTGGATGAGCTGTCCTTAGATCCTCAAGTCTTTGCAAGGATGCAACAGTTAAAGTTATTTGAAGTTACCAGAAGTTATGGCCATGAGCCAATCCTGTATTTTCCTCAGGGCCTTGAATATTTGCCAAATGACCTACGACTTTTTCGTTGGGATGGTTTTCCTTTGCAATCCTTGCCTCAGTCTTTTTGTGCAGAAAATCTTGTTGTGCTCAAGATGACTAAGAGCCGAGTGGAAAAACTCTGGGATGGGATCCAGAATCTTGAAAATTTAAAGAAAATTGACCTCAGTTATTCCAAATATCTGCTAGAGATCCCAGATTTGTCAAAGGCCTCAAATCTTGAAGAAGTGATACTCGATGGTTGTAGAAATTTGCGTAATGTTCATCCGTCTATTTTATCTCTCAACAAGCTTGTGCAATTAGACCTAGCTCTTTGCAAAGAGCTTACCAGTCTTCGAGAAGGCTAA 1998 0.3789 MEMKRNQVDFFVDNRLQEGDEISDALLKAIEESHISLVIFSKDYASSRWCLEELVKIIECMDRNKQIVIPVFYNIDPSDVRHQKGTYKDALAKHERNEGNLDKVPSWRSALRKAANLSGFHSSNFRDEAELIEKIANSLSFNLNLMDQSGLTDLVGIEERIADVESLLRQGSTTDVRIIGIWGMGGIGKTTIAGAVYNHLCFEYEGCCFMANITEELEKRGMIYLKNKILSTLLKGNDLNIDTPIGVPPYVKRRLGRKKVLLVLDDINDSEHLQNLVGPLCLFGSGSRIIVTTRDKQVLSNKVDNDNIYEAKALSSDEANKLFYANASKESCHDKEWIELSKRVIQYADGNPLALKALRSSLCGKSKEEWASLLQKLKNMPHSKIQNVLRLSYDRLDRAEKEIFLYIACFFKGYEFQPIISLLDACGFSTNIGLKVLQDKALIIEAKDSVRRSIIWMHDLIQEMGREIVREECVDYPGQRSRLWDPNDICQVLKNNKGTETIKSITLNISNLDELSLDPQVFARMQQLKLFEVTRSYGHEPILYFPQGLEYLPNDLRLFRWDGFPLQSLPQSFCAENLVVLKMTKSRVEKLWDGIQNLENLKKIDLSYSKYLLEIPDLSKASNLEEVILDGCRNLRNVHPSILSLNKLVQLDLALCKELTSLREG* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01809 665 SUPERFAMILY L domain-like 456 662 - -
Rops5g01809 665 PRINTS Disease resistance protein signature 254 268 - -
Rops5g01809 665 PRINTS Disease resistance protein signature 178 193 - -
Rops5g01809 665 PRINTS Disease resistance protein signature 348 362 - -
Rops5g01809 665 PRINTS Disease resistance protein signature 596 612 - -
Rops5g01809 665 Gene3D - 1 140 IPR035897 -
Rops5g01809 665 Pfam NB-ARC domain 163 396 IPR002182 GO:0043531
Rops5g01809 665 Pfam TIR domain 4 155 IPR000157 GO:0007165
Rops5g01809 665 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 120 IPR035897 -
Rops5g01809 665 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 662 IPR044974 GO:0006952
Rops5g01809 665 Gene3D - 141 308 IPR027417 -
Rops5g01809 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 407 IPR027417 -
Rops5g01809 665 Gene3D - 313 397 IPR042197 -
Rops5g01809 665 ProSiteProfiles TIR domain profile. 1 143 IPR000157 GO:0007165
Rops5g01809 665 SMART till_3 1 117 IPR000157 GO:0007165
Rops5g01809 665 Gene3D Ribonuclease Inhibitor 484 665 IPR032675 -
Rops5g01809 665 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01809 Rops-Chr5 37780291 37784608 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01809 29 662 WRKY Transcription Factor Family AT4G12020 34.059 3.64e-98 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01809 - - ccaj:109805840 932.554