Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01802 ATGCAGCGGAACCAAGTTGATTTCTTCGTGGATAACAGACTTCAAGAAGGAGATGAAATATCAGATGCTCTTCTGAAAGCCATTGAAGAATCACATATTTCTTTGGTCATATTCTCCAAAGACTATGCTTCTTCAAGGTGGTGCTTGGAAGAGCTTGTGAAAATAATTGAATGCATGGACAGGAATAAACAAATTGTGATTCCTGTTTTCTACAACATAGATCCATCTGATGTAAGGCACCAAAAAGGGACTTACAAAGATGCATTGGCTAAACATGAAAGAAATGAAGGAAACCTAGACAAGGTGCCAAGTTGGAGATCTGCTTTGAGAAAAGCTGCTGATCTTTCTGGATTTCATTCATCAAACTTTCGAGATGAAGCTGAGCTTATAGAAAAAATTGCCAACCGTTTGTCCTTCAAATTGAATCTTATGGACCAAAGTGGGTTAACAGACCTTGTTGGAATTGAAGAACGGATTGCAGATGTGGAGTCACTATTGCACCAAGGGTCAACAACAGATGTTCGTGTCATTGGGATTTGGGGCATGGGCGGTATCGGTAAGACAACTATTGCAGGTGCAGTATATAACCATCTTTGTTTTGAATATGAAGGATCCTGCTTTATGGCCAACATAACAGAAGAATTAGAGAAACGTGGAATGATTTATCTGAAGAATAAAATTCTCTCTACATTACTAAAGGAAAATGATCTAAATATTGACACACCTATTGGAGTTCCCCCTTATGTTAACAGAAGGCTGGGTCGTAAGAAGGTTCTTCTTGTTCTTGATGATATCAATGATTCAGAACACCTACAAAATTTAGTTGGAGCACTTTGTTTGTTTGGATCTGGTAGCAGAATCATTGTAACAACTAGAGACAAGCAAGTGCTTAGTAACAAAGTTGACAATGACAATATATATGAGGCTAAAGCATTAAGCTCTGATGAAGCTAATAAACTTTTTTGTGCAAATGCCTCCAAAGAAAGTTGTCATGACAAGGAGTGGATTGAGCTATCAAAAAGGGTGATTCAATATGCTGATGGAAACCCATTAGCTTTAAAAGTGTTGGGTTCTTCTCTTTGTGGTAAAAGCAAAGAGGAATGGGCAAGCCTATTGCAGAAACTTACGAACATGCCTCACTCCAAAATTCAAAATGTATTGAGGTTGAGTTATGGTAGACTTGATCGAGCAGAGAAGGAAATATTTCTATATATTGCATGTTTTTTTAAAGGATATGAATTTCAACCAATAATATCTCTTCTTGATGCTTGTGGTTTCTCAACAAATATTGGGTTGAAAGTCCTTCAAGACAAAGCCCTTATAATTGAAGCCAAGGACTCTGTAAGGAGATCAATTATATGGATGCATGACTTGATACAAGAAATGGGTCGGGAGATTGTTCGAGAAGAATGTGTTGATTACCCTGAGCAACGCAGTAGGTTATGGGATCCTAATGAAATTTGTCAAGTATTGTTAAATAACAAGGGAACTGAAACCATTAAAAGCATAACTCTGAACATCTCGAATTTGGATGAGCTGTCCTTAGATCCTCAAGTCTTTGCAAGGATGCAACAGTTAAAGTTTTTTGAATTTACCAGAAGTTATGGCCATGAGCCAATCCTGTATTTTCCTCAGGGCCTTGAATATTTGCCAAATGACCTACGACTTTTTCGTTGGGATGGTTTTCCTTTGAAATCCTTGCCTCAGTCTTTTTGTGCAAAAAATCTTGTTGTGCTCAAGATGCCTAAGAGCCGAGTGGAAAAACTCTGGGATGGGATCCAGAATCTTGAAAATTTAAAGAAAATTGACCTCAATTATTCCGAATATCTGCTAGAGATCCCAGATTTTTCAAAGGCCTCAAATCTTGAAGAAGTGATACTCTTTGGTTGCAGAAATTTGCGTAATGTTCATCCGTCTATTTTATCTCTCGACAAGCTTGTGCGATTAAACCTAGGATTTTGCAAAGAGCTTACCAGTCTTCGAGGTGAAACCCATTTAAGATCCCTTCGTGAGCTCTACCTCAATGGCTGCTCAAGACTCGAGGAGTTTTCAGTGACTTCAGAGAATATGGAAGTCTTAAGTTTAACGACAACGGCTATCAATGAGTTACCCTCATCAATTTACAGTCTCAGAAAGTTGGAACGTTTGTTTCTTCGTGACTGCAGAAGTCTAAACTATCTTCCAAACAAGCTTGCTGACTTAAGATCACTTAAGTATCTTGAAATTACTCATTCCATAATCCTTGATGCGTCAAGTTTGCATATTCTAATTAATGGTGCGAGGTCTTTAGAAGAGTTATGGCTGGAAAATTGTCCTAACTTATTTGAAATTCCAGAGAACATCAGCCTCCTATCTTCGCTGTCTAAGTTGTCACTAAGAGGAATAAATATTGAGAGATTACCTGCAAGCATCAAGCATCTTTCTAAGCTGAAAAGGCTTCACATAGGGGGTTGCACGAGGCTTTGTCATCTGCCAGAGCTTCCACCATCCACAACAGAGTTAAATGCCAATAACTGTTCATCATTGGAGACTGTAATGTTCACCTCGAGAGCCTCTGAACTACTACAAGCAGATGATTGGATAGGCATAAAATTCCTAAATTGTGGTAAGTTGGATGAACGTTCAGTAAATGCTATTGGAGTGAATGCCCATGCAAACATGAAGAAGTTCGCCTTTGAAAATCTCTTAACAACAGGAATTAAACCTACAGCAGAAGTTATCTACCCTGGAAGTGAAGTTCCAGAGTGGTTCATGTACAGGACAACACAGGCTTCAGTAACTGTTGATCTCTCTTCTGCTCCACCTTCCAAGTTTATGGGTTTCATCGTCTGCGCCATTATTGTTGGCCCGCCCCCATCAGGCTTCAGAAGTGCTGGGTATATCTTTCATGACGTTTACCAAGGAATTTCTTTTCGACCACGTGTGTCTGTGGTATGA 2937 0.3902 MQRNQVDFFVDNRLQEGDEISDALLKAIEESHISLVIFSKDYASSRWCLEELVKIIECMDRNKQIVIPVFYNIDPSDVRHQKGTYKDALAKHERNEGNLDKVPSWRSALRKAADLSGFHSSNFRDEAELIEKIANRLSFKLNLMDQSGLTDLVGIEERIADVESLLHQGSTTDVRVIGIWGMGGIGKTTIAGAVYNHLCFEYEGSCFMANITEELEKRGMIYLKNKILSTLLKENDLNIDTPIGVPPYVNRRLGRKKVLLVLDDINDSEHLQNLVGALCLFGSGSRIIVTTRDKQVLSNKVDNDNIYEAKALSSDEANKLFCANASKESCHDKEWIELSKRVIQYADGNPLALKVLGSSLCGKSKEEWASLLQKLTNMPHSKIQNVLRLSYGRLDRAEKEIFLYIACFFKGYEFQPIISLLDACGFSTNIGLKVLQDKALIIEAKDSVRRSIIWMHDLIQEMGREIVREECVDYPEQRSRLWDPNEICQVLLNNKGTETIKSITLNISNLDELSLDPQVFARMQQLKFFEFTRSYGHEPILYFPQGLEYLPNDLRLFRWDGFPLKSLPQSFCAKNLVVLKMPKSRVEKLWDGIQNLENLKKIDLNYSEYLLEIPDFSKASNLEEVILFGCRNLRNVHPSILSLDKLVRLNLGFCKELTSLRGETHLRSLRELYLNGCSRLEEFSVTSENMEVLSLTTTAINELPSSIYSLRKLERLFLRDCRSLNYLPNKLADLRSLKYLEITHSIILDASSLHILINGARSLEELWLENCPNLFEIPENISLLSSLSKLSLRGINIERLPASIKHLSKLKRLHIGGCTRLCHLPELPPSTTELNANNCSSLETVMFTSRASELLQADDWIGIKFLNCGKLDERSVNAIGVNAHANMKKFAFENLLTTGIKPTAEVIYPGSEVPEWFMYRTTQASVTVDLSSAPPSKFMGFIVCAIIVGPPPSGFRSAGYIFHDVYQGISFRPRVSVV* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01802 978 PRINTS Disease resistance protein signature 176 191 - -
Rops5g01802 978 PRINTS Disease resistance protein signature 252 266 - -
Rops5g01802 978 PRINTS Disease resistance protein signature 346 360 - -
Rops5g01802 978 PRINTS Disease resistance protein signature 594 610 - -
Rops5g01802 978 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 143 - -
Rops5g01802 978 Gene3D - 1 142 IPR035897 -
Rops5g01802 978 Gene3D Ribonuclease Inhibitor 464 687 IPR032675 -
Rops5g01802 978 Gene3D Ribonuclease Inhibitor 688 856 IPR032675 -
Rops5g01802 978 Pfam TIR domain 3 153 IPR000157 GO:0007165
Rops5g01802 978 FunFam Disease resistance protein RPS4 497 688 - -
Rops5g01802 978 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 405 IPR027417 -
Rops5g01802 978 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 731 IPR044974 GO:0006952
Rops5g01802 978 Gene3D - 311 395 IPR042197 -
Rops5g01802 978 Pfam Leucine Rich Repeat 575 594 IPR011713 -
Rops5g01802 978 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 118 IPR035897 -
Rops5g01802 978 Gene3D - 143 305 IPR027417 -
Rops5g01802 978 SMART till_3 2 115 IPR000157 GO:0007165
Rops5g01802 978 SUPERFAMILY L domain-like 454 846 - -
Rops5g01802 978 Pfam NB-ARC domain 159 384 IPR002182 GO:0043531
Rops5g01802 978 Pfam C-JID domain 908 947 IPR045344 -
Rops5g01802 978 ProSiteProfiles TIR domain profile. 1 141 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01802 Rops-Chr5 37659426 37666290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01802 25 813 WRKY Transcription Factor Family AT4G12020 32.832 7.27e-111 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01802 - - ccaj:109805840 1267.29