Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01801 ATGCAGCGGAACCAAGTTGATTTCTTCGTGGATAACAGACTTCAAGAAGGAGATGAAATATCAGATGCTCTTCTGAAAGCCATTGAAGAATCACATATTTCTTTGGTCATATTCTCCAAAGACTATGCTTCTTCAAGGTGGTGCTTGGAAGAGCTTGTGAAAATAATTGAATGCATGGACAGGAATAAACAAATTGTGATTCCTGTTTTCTACAACATAGATCCATCTGATGTAAGGCACCAAAAAGGGACTTACAAAGATGCATTGGCTAAACATGAAAGAAATGAAGGAAACCTAGACAAGGTGCCAAGTTGGAGATCTGCTTTGAGAAAAGCTGCTAATCTTTCTGGATTTGATTCATCAAACTGTCGAGATGAAGCTGAGCTTATAGAAAAAATTGCCAACAGTTTGTCGTTCAACTTGAATCTTATGGACCAAAATGGGTTAACAGACTTTGTTGGAATTGAAGAACGGATTGCAGATGTGGAGTCACTATTGCACCAAGGGTCAACAACAGATGTTCGTGTCATTGGGATTTGGGGCATGGGCGGTATCGGTAAGACAACTATTGCAGGTGCAGTATATAACCATCTTTGTTTTGAATATGAAGGATGCTGCTTTATGGCCAACATAACAGAAGAATTAGAGAAACGTGGAATGATTTATCTGAAGAATAAAATTCTCTCTACATTACTAAAGGGAAATGATCTAAATATTGACACACCTATTGGAGTTCCCCCTTATGTTAAGAGAAGGCTGGGTCGTAAGAAGGTTCTTCTTGTTCTTGATGATATCAATGATTCAGAACACCTACAAAATTTAGTTGGACCACTTTGTTTGTTTGGATCTGGTAGCAGAATCATTGTAACAACTAGAGACAAGCAAGTGCTTAGTAACAAAGTTGACAATGACAATATATATGAGGCTAAAGCATTAAGCTCTGATGAAGCTAATAAACTTTTCTATGCAAATGCCTCCAAAGAAAGTTGTCATGACAAGGAGTGGATTGAGCTATCAAAAAGGGTGATTCAATATGCTGATGGAAACCCATTAGCTTTAAAAGCGTTGCGTTCTTCTCTTTGTGGTAAAAGCAAAGAGGAATGGGCAAGCCTATTGCAGAAACTTAAGAACATGCCTCACTCCAAAATTCAAAATGTATTGAGGTTGAGTTATGATAGACTTGATCGAGCAGAGAAGGAAATATTTCTATATATTGCATGTTTTTTTAAAGGATATGAATATCAGCCAATAATATCTCTTCTTGATGCTTGTGGTTTCTCAACAAATATTGGGTTGAAAGTCCTTCAAGACAAAGCCCTTATAATTGAAGCCAAGGACTCTGTAAGGAGATCAATTATATGGATGCATGACTTGATACAAGAAATGGGTCGGGAGATTGTTCGAGAAGAATGTGTTGATTACCCTGGGCAACGCAGTAGGTTATGGGATCCTAATGATATTTGTCAAGTATTGAAAAATAACAAGGGAACTGAAACCATTAAAAGCATAACTCTGAACATCTCGAATTTGGATGAGCTGTCCTTAGATCCTCAAGTCTTTGCAAGGATGCAACAGTTAAAGTTTTTTGAAGTTACCGGAAGTTATGGCCATGAGCCAATCCTGTATTTTCCTCAGGGCCTTGAATATTTGCCAAATGACCTACGACTTTTTCGTTGGGATGGTTTTCCTTTGAAATCCTTGCCTCAGTCTTTTTGTGCAAAAAATCTTGTTGTGCTCGAGATGACTAATAGCCGAGTGGAAAAACTCTGGGATGGGATCCAGAATCTTGAAAATTTAAAGAAAATTGACCTCAGTGATTCCAAATATCTGCTAGAGATCCCAGATTTTTCAAAGGCCTCAAATCTTGAAGAAGTGATACTCTCTGGTTGCAGAAATTTGCGTAATGTTCATCCGTCTATTTTATCTCTCAACAAGCTTGTGCGATTAAACCTAGAATTTTGCAAAGAGCTTACCAGTCTTCGAGTTGTCGCCTATGCTAAGACGATGGTAAACGCCAATAGAAAGGAGATCAAAAAAGATAAAGCAAAATCATTGGCTTCAAGGGCAAACATGGTACAAACTCAAAACAAAAGGTACACTAATAAACTCAAGAATAAGACATATTACAATAAGCCAACTGTTCCAAAAATGAATAACCCCATTTTCAAAAGGACGAGTAATTACTTTGTCTGTGGGAAGCTTGGTCATCGTGCAACTCAATGTAGACATAAAAAGCAGGGAAATGGCAATCCTCTCAAGCCAAGAGCAAACTTAAGGAGAAGACATAATAGCTGTGGTCATTTCCCAAGCTTTACTCATGGAAGGTGTGAATGA 2334 0.3792 MQRNQVDFFVDNRLQEGDEISDALLKAIEESHISLVIFSKDYASSRWCLEELVKIIECMDRNKQIVIPVFYNIDPSDVRHQKGTYKDALAKHERNEGNLDKVPSWRSALRKAANLSGFDSSNCRDEAELIEKIANSLSFNLNLMDQNGLTDFVGIEERIADVESLLHQGSTTDVRVIGIWGMGGIGKTTIAGAVYNHLCFEYEGCCFMANITEELEKRGMIYLKNKILSTLLKGNDLNIDTPIGVPPYVKRRLGRKKVLLVLDDINDSEHLQNLVGPLCLFGSGSRIIVTTRDKQVLSNKVDNDNIYEAKALSSDEANKLFYANASKESCHDKEWIELSKRVIQYADGNPLALKALRSSLCGKSKEEWASLLQKLKNMPHSKIQNVLRLSYDRLDRAEKEIFLYIACFFKGYEYQPIISLLDACGFSTNIGLKVLQDKALIIEAKDSVRRSIIWMHDLIQEMGREIVREECVDYPGQRSRLWDPNDICQVLKNNKGTETIKSITLNISNLDELSLDPQVFARMQQLKFFEVTGSYGHEPILYFPQGLEYLPNDLRLFRWDGFPLKSLPQSFCAKNLVVLEMTNSRVEKLWDGIQNLENLKKIDLSDSKYLLEIPDFSKASNLEEVILSGCRNLRNVHPSILSLNKLVRLNLEFCKELTSLRVVAYAKTMVNANRKEIKKDKAKSLASRANMVQTQNKRYTNKLKNKTYYNKPTVPKMNNPIFKRTSNYFVCGKLGHRATQCRHKKQGNGNPLKPRANLRRRHNSCGHFPSFTHGRCE* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01801 777 Gene3D - 311 395 IPR042197 -
Rops5g01801 777 SUPERFAMILY "Winged helix" DNA-binding domain 381 492 IPR036390 -
Rops5g01801 777 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 143 - -
Rops5g01801 777 Pfam TIR domain 3 147 IPR000157 GO:0007165
Rops5g01801 777 ProSiteProfiles TIR domain profile. 1 141 IPR000157 GO:0007165
Rops5g01801 777 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 670 IPR044974 GO:0006952
Rops5g01801 777 Pfam NB-ARC domain 159 394 IPR002182 GO:0043531
Rops5g01801 777 Gene3D - 145 306 IPR027417 -
Rops5g01801 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 405 IPR027417 -
Rops5g01801 777 Gene3D - 1 144 IPR035897 -
Rops5g01801 777 SMART till_3 2 115 IPR000157 GO:0007165
Rops5g01801 777 PRINTS Disease resistance protein signature 252 266 - -
Rops5g01801 777 PRINTS Disease resistance protein signature 346 360 - -
Rops5g01801 777 PRINTS Disease resistance protein signature 594 610 - -
Rops5g01801 777 PRINTS Disease resistance protein signature 176 191 - -
Rops5g01801 777 Gene3D Ribonuclease Inhibitor 484 684 IPR032675 -
Rops5g01801 777 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 118 IPR035897 -
Rops5g01801 777 SUPERFAMILY L domain-like 470 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01801 Rops-Chr5 37607871 37618289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01801 25 660 WRKY Transcription Factor Family AT4G12020 33.488 1.21e-95 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01801 - - ccaj:109805840 938.717