Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01792 ATGAAAATGGAGGAATCGAAGGAAAACAAGGGTTGGAGAATGGAAGTGGATGAGAACCTGAAGAGGCTTCACTCTCTATTGTTCGGTGCAGAACGTGCACTCGAAAACAAGGACTTCTCCTCTGCTTACATCCTCACCCTTCGCCTCCTCGGATTTCTCGAATCACGCTCCCACTCTGACATCGATGAAACCTTCCTTCAACCAATTCGCCGCCAAGCACTCTCTCTTCTTCACTCCGCTCGCCGATCCCTCACTCCTTTATCTGATCGCCAAGCTTTTGAGCAAGCAAAGAGATCTCCGGGATGTGTTTTTGGCACAACAGGAGATATTGACATTGAGAAGATTCGGAATTCAAAATATTTTCGAGCTCTTATCAAGCAATCCAAAGAAAAAGATATAAATCAATTGGTTGATCAACTGGGGAAGCAAGACAAAGCAGGCAGCAAAGCATCAAAGGAAGTGGCGCAAGCAAAGTTAACATCCATGTATGGGAAAAGTAACTTGAGGACTAGTAATGATTACAAGAGTTTTTTCAACTTGAAGAATAACAGCTCTGAGGACTGCATGATTGTTGAAAGGCGTCAATCACATGCCAGCCATACAAGGGGTCTTGGTGTCTCTTCTTTCTTGGAAGCTGAAGGAGAAGAAAGAGCTTCTGGAATCAATTTTTCGACAAAACGTATGCACATGGAAAATAATAGCCCCAGAGTTGGTTATGTGAAGTCACCTTCAAGCAAGGAGGAAGCTAATCCTGATGTTTGTGGCAACGGGTTTGTTACTGCCAGAGCAAAATTGGAAATGGAAGCAAAGCAAAAGCGAGGAGGAGCAGTTGGTTCACCCAGTGCATCTGTCTCACCACAATGTGACAACAATCCTGGCAACAGGTTATATGGTGGGAGATCATATGGTGTTTCGCGACGTAACTTCCGTGGTAATTTTGTTCCCCCTATTAAATCCAATGGGAACAATACTGGAAATATGAGTTCACGAATTGCTGGAAAGTGTGATGATTCTTTAGATGACTCTACAAAGAGATGTTTGGAACTCTTGTGTGGTCCTGATGGTGAGCTTCCAGAGAAATTGAGGAATTTGGAACCTCGCCTTATTGAACATGTTAGCAATGAGATTATGGATAAAGATCCCAATGTCCGTTGGGATGATATTGCTGGATTGGAGCATGCCAAGAAATGTGTCACTGAAATGGTTATATGGCCTATGCTACGTCCTGACATATTTATGGGCTGCCGTTCTCCTGGGAGAGGTCTGCTTCTATTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCAAAGGCAACCTTCTTTTACATATCTGCAAGTTCTTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCCCTTTTTGGAGTTGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAAATAGATTCGCTCCTGTCTCAGCGTAAGTCAGATGGTGAACATGAATCAAGTAGACGACTAAAGACACAGTTTCTCATTGAAATGGAAGGCTTCGACAGTGGTAGCGAGCAAATTCTGCTTATAGGGGCAACAAATCGTCCCCAAGAACTTGATGAAGCAGCACGTAGGAGACTTACTAAAAGACTTTATATTCCCCTACCATCTTCAGAGGCAAGAGCTTGGATTGTACGTAACCTTTTAGAGAAGGATGAATTATTCAAACTATCAAATGAGGAAATGGATATCATATGCAACTTAACAGCAGAATATTCAGGATCAGACATGAAAAACTTGGTGAAGGATGCTTCTATGGGTCCCCTAAGAGATGCTTTAAGACAAGGCATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGGCCTGTAACTCTTCAGGACTTCGAGAATGCCCTGCAAGAGGTGAGGCCTTCTGTTTCTCCAAATGAACTTGGCACTTACGATCAATGGAACAAACAATTTGGAAGCCTATCAGTGTAG 1992 0.4307 MKMEESKENKGWRMEVDENLKRLHSLLFGAERALENKDFSSAYILTLRLLGFLESRSHSDIDETFLQPIRRQALSLLHSARRSLTPLSDRQAFEQAKRSPGCVFGTTGDIDIEKIRNSKYFRALIKQSKEKDINQLVDQLGKQDKAGSKASKEVAQAKLTSMYGKSNLRTSNDYKSFFNLKNNSSEDCMIVERRQSHASHTRGLGVSSFLEAEGEERASGINFSTKRMHMENNSPRVGYVKSPSSKEEANPDVCGNGFVTARAKLEMEAKQKRGGAVGSPSASVSPQCDNNPGNRLYGGRSYGVSRRNFRGNFVPPIKSNGNNTGNMSSRIAGKCDDSLDDSTKRCLELLCGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVRWDDIAGLEHAKKCVTEMVIWPMLRPDIFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIVRNLLEKDELFKLSNEEMDIICNLTAEYSGSDMKNLVKDASMGPLRDALRQGIEITKLKKEDMRPVTLQDFENALQEVRPSVSPNELGTYDQWNKQFGSLSV* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01792 663 MobiDBLite consensus disorder prediction 278 294 - -
Rops5g01792 663 Gene3D - 553 639 - -
Rops5g01792 663 ProSitePatterns AAA-protein family signature. 524 543 IPR003960 GO:0005524|GO:0016887
Rops5g01792 663 FunFam Fidgetin like 1 553 639 - -
Rops5g01792 663 Gene3D - 381 655 IPR027417 -
Rops5g01792 663 PANTHER AAA DOMAIN-CONTAINING 169 660 - -
Rops5g01792 663 FunFam Fidgetin-like 1 381 563 - -
Rops5g01792 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 658 IPR027417 -
Rops5g01792 663 Pfam Vps4 C terminal oligomerisation domain 625 659 IPR015415 -
Rops5g01792 663 SMART AAA_5 418 554 IPR003593 GO:0016887
Rops5g01792 663 Pfam ATPase family associated with various cellular activities (AAA) 422 552 IPR003959 GO:0005524|GO:0016887
Rops5g01792 663 MobiDBLite consensus disorder prediction 273 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01792 Rops-Chr5 37524652 37530906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01792 359 661 Calmodulin-binding Proteins AT3G56690 31.169 7.01e-40 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01792 K22766 - gmx:100789161 1108.59