Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01787 ATGGGAGATGAATCTAGGCTGCTTCAGGAAAACACATCAATCAGTGACAACATGGAAGAGGAAGAAGTTGAAGAAAGAGATCCAGAAAGAAATCCATTTAATGAACCACTTCTTAAGAGGAACAGGACCCTTTCTTCCAATCCACTTGCTTTGGTTGGAGCAAAAGTTTCCTACATAGAAAGCTTGGATTATGAGATCAATGAGAATGATCTATTCAAGCAAGATTGGAGGAGCAGATCAAGGGCCCAAGTGTTGCAATACATATTCTTGAAATGGTCACTTGCATTCCTTGTTGGTCTTCTTACTGGTATTATAGCCACTCTCATCAATCTTGCTGTTGAGAACATTGCAGGGTACAAACTTCTTGCTGTTTTTGAATACATCCAAAAAGAAAGGTACTTGATGGGTTTCCTATATTTCACGGGCACTAATTTCTTTTTGACATTCGTTGCTGCTACTCTCTGTGTGTGTTTGGCACCGACAGCTGCTGGACCTGGAATACCTGAAGTCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTATGGTGCTACAACGTTGTTTGTCAAGATAATTGGAAGCATTGGAGCTGTCTCAGCAGGCCTAGATTTAGGAAAAGAAGGACCATTAGTACACATTGGAAGTTGCATTGCTTCTTTACTAGGCCAAGGAGGCCCTGATAATCACAGAATCAAATGGCGTTGGCTAAGATATTTCAACAATGATCGTGACCGTCGTGATCTTATAACATGTGGTGCTTCTTCAGGGGTTTGTGCAGCTTTTCGTGCTCCTGTTGGTGGAGTTCTCTTTGCTCTTGAAGAGGTTGCAAGTTGGTGGAGAAGTGCACTCTTATGGAGAACTTTTTTTAGCACTGCTGTGGTTGTGGTAGTGTTAAGGGCATTCATTGAAATTTGTCATGAAGGGAAATGTGGTCTTTTTGGTGAAGGAGGGTTGATCATGTTTGATGTGAGCAGTGTCACTGTGAGGTATCATGTGATGGATATCATCCCTGTTGTTATCATTGGAGTCATTGGTGGCGTACTTGGAAGTTTTTATAACTATCTTCTCCACAAGGTCCTCCGTGTCTACAATCTCATCAACCAGAAAGGAAGAATGTATAAGCTCCTCCTCAGTCTTGCAGTAGCACTCTTCACATCAGTGTGCCAATATGGTCTCCCATTCCTAGCAAAATGCACCCCTTGTGATTCATCACTTCCAGAGTCTGCATGCCCCGCAAATGGAAGGTCAGGAAATTACAAACAATTCAACTGCCCAAATGGTTCCTACAATGATCTTGCTACTCTGCTACTCACCACAAATGATGAAGCAGTTAGAAACATATTCTCAACCAACACTCCTCATGAATTCCAACCCTTCTCCATCTTAATTTTCTTTGCACTCTATTGCATATTAGGACTATTTACCTTTGGAATTGCTGTGCCATCAGGGCTATTCCTCCCAATCATACTCATGGGTTCAGGTTATGGCCGCCTCCTTGGCATCCTAATGGGACCTCATACAAATATTGATCAAGGGTTGTTTGCAGTTCTTGGTGCAGCCTCCCTCATGGCTGGTTCTATGAGGATGACTGTATCACTTTGTGTGATCTTCCTTGAACTAACCAACAACCTTCTACTTCTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTTGGAGACAGTTTCAACCCAAGTATCTATGAGATCATATTGCACTTGAAAGGTCTTCCTTTCATGGATGCAAACCCTGAACCATGGATGAGAAATCTCTCAGTTGGAGAGCTTGTTGATGTTAAGCCATCAGTGGTTAGCTTCCGTGGAGTGGAAAAGGTAGCCAACATAGTCAATGCATTGAAAAACACTACACACAATGGTTTCCCTGTCATGGATGATGGGGTAGATTCACCAACAGGAATGGCCAATGAGGTGACACAATTGCATGGACTAATTCTAAGAGCACACCTCATCCAAGTGCTGAAGAAGAAGTGGTTCTTGAAAGAGAGAAGGAGAACTGAGGAATGGGAAGTGAGAGAGAACTTCACTTGGGTGGAACTTGCTGAAAGAGAAGGGAATATTGAAGATGTGGCTGTGACAAAAGAAGAAATGGAGATGTTTGTTGATTTACACCCTCTCACCAATACAACTCCTTATACAGTTCTAGAGAGCATGTCAGTAGCTAAAGCAAGGGTCCTGTTCAGACAAGTAGGACTTCGGCATATGCTTGTTGTACCAAAATACCAAGCATCTGGGGTTTCTCCTGTAATTGGGATCTTGACAAGGCAGGATCTACTGGCCTATAACATTCTTACAGTCTTTCCTCACCTGGAAAAATCTAAGAGCAGAGAAAAGAGGAACTGA 2367 0.4233 MGDESRLLQENTSISDNMEEEEVEERDPERNPFNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRAQVLQYIFLKWSLAFLVGLLTGIIATLINLAVENIAGYKLLAVFEYIQKERYLMGFLYFTGTNFFLTFVAATLCVCLAPTAAGPGIPEVKAYLNGVDTPNMYGATTLFVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVASWWRSALLWRTFFSTAVVVVVLRAFIEICHEGKCGLFGEGGLIMFDVSSVTVRYHVMDIIPVVIIGVIGGVLGSFYNYLLHKVLRVYNLINQKGRMYKLLLSLAVALFTSVCQYGLPFLAKCTPCDSSLPESACPANGRSGNYKQFNCPNGSYNDLATLLLTTNDEAVRNIFSTNTPHEFQPFSILIFFALYCILGLFTFGIAVPSGLFLPIILMGSGYGRLLGILMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLSVGELVDVKPSVVSFRGVEKVANIVNALKNTTHNGFPVMDDGVDSPTGMANEVTQLHGLILRAHLIQVLKKKWFLKERRRTEEWEVRENFTWVELAEREGNIEDVAVTKEEMEMFVDLHPLTNTTPYTVLESMSVAKARVLFRQVGLRHMLVVPKYQASGVSPVIGILTRQDLLAYNILTVFPHLEKSKSREKRN* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01787 788 Pfam Voltage gated chloride channel 148 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g01787 788 SUPERFAMILY Clc chloride channel 69 584 IPR014743 -
Rops5g01787 788 Pfam CBS domain 717 769 IPR000644 -
Rops5g01787 788 FunFam Chloride channel ClC3 83 401 - -
Rops5g01787 788 CDD CBS_pair_voltage-gated_CLC_euk_bac 602 769 - -
Rops5g01787 788 Gene3D Clc chloride channel 83 584 - -
Rops5g01787 788 PRINTS Chloride channel signature 160 177 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g01787 788 PRINTS Chloride channel signature 191 210 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g01787 788 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g01787 788 PRINTS Chloride channel signature 569 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g01787 788 PRINTS Chloride channel signature 481 501 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g01787 788 PRINTS Chloride channel signature 513 529 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g01787 788 PRINTS Chloride channel signature 531 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops5g01787 788 CDD ClC_6_like 60 582 - -
Rops5g01787 788 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 13 773 - -
Rops5g01787 788 MobiDBLite consensus disorder prediction 1 36 - -
Rops5g01787 788 SUPERFAMILY CBS-domain pair 586 769 IPR046342 -
Rops5g01787 788 PRINTS Plant CLC chloride channel signature 65 73 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops5g01787 788 PRINTS Plant CLC chloride channel signature 433 449 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops5g01787 788 PRINTS Plant CLC chloride channel signature 290 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops5g01787 788 PRINTS Plant CLC chloride channel signature 308 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops5g01787 788 PRINTS Plant CLC chloride channel signature 276 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops5g01787 788 Gene3D - 586 774 IPR046342 -
Rops5g01787 788 SMART cbs_1 604 663 IPR000644 -
Rops5g01787 788 SMART cbs_1 718 771 IPR000644 -
Rops5g01787 788 ProSiteProfiles CBS domain profile. 715 779 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01787 Rops-Chr5 37418228 37425068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01787 24 782 Ion Channels AT3G27170 79.051 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01787 K05016 - gmx:778094 1379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02306 8 53046450 53057787 Rops5g01787 5 37418228 37425068 PCT