Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01781 ATGGCGGAACATTCTGGAACATTCCAGAAGGTTCCTTCTCCATCGAAGAACGACAATGTCGTTTTCGTAAACGGCAACCCTGTCCTCGTTGCCCAGCCTCTCATGGTGATTCCGCTTGTGCAATCTGGGAATGTTAAGGTTCGAGGTCGATGCATTGCCACCCCATATAGCCTGCAAATGATGCAAGAAATCATGTTGTTAGTGAGGTATAACACTTATGGCTCTTTTCTGTTGATTGTGGCATTGTTGCTTGAGAATGGAGCTGATGTGAATTCAAGAAATTATTCTGGGCAGAATAGCTTGGAAGACCTATTCAGCCTCTTGTGTTTCTTGCGTGTTGAAACTTGGTGCAACTGGGCATGGTGGAATAAGTTGGTTCAAAGGCCTTATGAGAATGGGGATCCAAGAGCCCTGAAATTGGTCAAGGCCATTTTGAGGACACTGATGTTAAGAAGAACGAAGGAAACAAAGGATAAACAGGGAAGGCCTATACTTGTCCTGCCACCAACTGATATTCAATTGGTTGAGTGTGAGCAGTCAGAATCTGAACGGGACTTCTATGATGCCCTCTTCGTGAGATCTAAAGTTCAATTTGATCAATATGTTGCACAAGGAAAGGTTCTTCACCACTATGCAAATATCCTTGACCTGCTAATGCAGTTGAGACGGTGCTGTAACCATCCATTTTTGGTTATGTGTGGCAATGATTCCCAGAAATATGCAGACTTAAGCAGATTCGCAAGAAAATTCCTCCAGTCTAATACTGAATCACCCGATACATGTGGCCAAAGGGATCTGCAGCAATATGCAGAGTTGAACAAACTTGCCAGTAAATTCCTTATAAATTCTGATTCTTCGCGCCCTATGCAATCTTGTGGATACATTGATGAGGTTTTGGAGCATATTCAAAAGAATGAAACCGTAGAATGCTCTATATGTATGGAATCACCAGATGATCCTGTGTTTACACCATGTGCACATAGGTTTTGTAGAGAATGCCTATTTAATTGCTGGGGGAACTCAGCGGGTGGTAAGTGTCTAATCTGTCGTCAATTGCTCAATAAAAATGATCTGATTACTAGTCCCTCTGAAAGCCCGTTCAAGGTTGATATTGAGAACAATCGGACCGAGTCTTCAAAGTGGACTTCATTTTTTGATCTGTTGGAGAATCTATTGAGGAGGAGAGGAATTGGTTTTTTAAGATTTGATGGGAAATTGACTCAGAAACAGAGGGAGAAAGTTCTGAATGAATTTAACGAGTCAAGAGAGAAAAGGGTTTTATTGATGTCAATAAGAGCTGGTGGCGTGGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGGATTCATCGTATAGGACAAAAGCGAAGAGTTATTTAG 1428 0.4195 MAEHSGTFQKVPSPSKNDNVVFVNGNPVLVAQPLMVIPLVQSGNVKVRGRCIATPYSLQMMQEIMLLVRYNTYGSFLLIVALLLENGADVNSRNYSGQNSLEDLFSLLCFLRVETWCNWAWWNKLVQRPYENGDPRALKLVKAILRTLMLRRTKETKDKQGRPILVLPPTDIQLVECEQSESERDFYDALFVRSKVQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMCGNDSQKYADLSRFARKFLQSNTESPDTCGQRDLQQYAELNKLASKFLINSDSSRPMQSCGYIDEVLEHIQKNETVECSICMESPDDPVFTPCAHRFCRECLFNCWGNSAGGKCLICRQLLNKNDLITSPSESPFKVDIENNRTESSKWTSFFDLLENLLRRRGIGFLRFDGKLTQKQREKVLNEFNESREKRVLLMSIRAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRRVI* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01781 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 358 IPR013083 -
Rops5g01781 475 CDD SF2_C_SNF 379 475 - -
Rops5g01781 475 Gene3D - 96 153 IPR038718 -
Rops5g01781 475 Gene3D - 378 475 IPR027417 -
Rops5g01781 475 SMART ring_2 310 349 IPR001841 -
Rops5g01781 475 Pfam Zinc finger, C3HC4 type (RING finger) 308 351 - -
Rops5g01781 475 CDD RING-HC 309 349 - -
Rops5g01781 475 Pfam Helicase conserved C-terminal domain 388 469 IPR001650 -
Rops5g01781 475 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 98 474 - -
Rops5g01781 475 SMART helicmild6 386 469 IPR001650 -
Rops5g01781 475 SUPERFAMILY RING/U-box 306 360 - -
Rops5g01781 475 Pfam SNF2-related domain 98 230 IPR000330 GO:0005524|GO:0140658
Rops5g01781 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 474 IPR027417 -
Rops5g01781 475 ProSitePatterns Zinc finger RING-type signature. 325 334 IPR017907 -
Rops5g01781 475 Gene3D - 168 303 IPR027417 -
Rops5g01781 475 ProSiteProfiles Zinc finger RING-type profile. 310 350 IPR001841 -
Rops5g01781 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 475 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01781 Rops-Chr5 37305662 37308331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01781 98 474 RAD5 or RAD16-like Gene Family AT5G43530 60.697 7.15e-168 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops5g01781 SNF2_N 2.9e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01781 K15505 - gmx:100806677 625.55