Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01734 ATGTACAAGATAACAATTGCGAAATATCCTCAGTTCTCAACCGTGCGTCCATTTCTGTGGACTGAGATGGCTGGAGGTGTTATTCAGCAGTTACTGAGGAGGAAACTCAAATCCCATTCTGCTAATCCTTCTATTTCATCCATTATCACAAAGAAAGATGGTGCTGGCTCTACTGGCAGCAACTCCTTAAGAGCCCTTGCGTTAATTGGAGCTGGTGTCTCAGGACTTTTGGGTTTTGCTACAACAGCATCAGCTGATGAAGCTGAGCATGGCCTGGCATGTGCAAACTATCCATGGCCTCACGAGGGCATCCTCAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATCAACAAGTCTGTGCTTCCTGTCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTGGCTTATACAGAAGAGGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTTACGCGTCCTGGTAAACTCAGTGATCGCTTTCCTCAGCCATATGCAAATGAATCAGCTGCTAGGTTTGCCAATGGAGGAGCCTATCCTCCAGATCTAAGTCTTATTACCAAAGCTCGTCACAATGGTCAGAACTATGTGTTCGCCCTTCTAACTGGTTATCGTGATCCCCCTGCTGGTGTATCGATTAGAGATGGACTACACTATAATCCTTATTTTCCTGGTGGGGCCATTGCCATGCCTCAAATGCTTAATGAGGGTGCTGTTGAATATGAAGATGGTACCCCTGCTACAGAATCTCAGATGGGGAAAGATATTGTATCATTCTTGACTTGGGCTGCAGAACCTGAGATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTACTATCATTGGCATTACTTCAAGCTGCCTATTATCGTCGTCTTCGGTGGTCTGTTCTCAAGTCGCGCAAGCTGGTTCTTGATGTCGTCAACTAG 987 0.4509 MYKITIAKYPQFSTVRPFLWTEMAGGVIQQLLRRKLKSHSANPSISSIITKKDGAGSTGSNSLRALALIGAGVSGLLGFATTASADEAEHGLACANYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIRDGLHYNPYFPGGAIAMPQMLNEGAVEYEDGTPATESQMGKDIVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01734 328 SUPERFAMILY Cytochrome c 92 282 IPR036909 GO:0009055|GO:0020037
Rops5g01734 328 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 283 327 IPR021157 -
Rops5g01734 328 Pfam Cytochrome C1 family 99 315 IPR002326 GO:0009055|GO:0020037
Rops5g01734 328 PANTHER CYTOCHROME C1 53 326 IPR002326 GO:0009055|GO:0020037
Rops5g01734 328 FunFam Cytochrome c1, heme protein 88 283 - -
Rops5g01734 328 Gene3D - 284 327 - -
Rops5g01734 328 PRINTS Cytochrome C1 signature 264 283 IPR002326 GO:0009055|GO:0020037
Rops5g01734 328 PRINTS Cytochrome C1 signature 117 136 IPR002326 GO:0009055|GO:0020037
Rops5g01734 328 PRINTS Cytochrome C1 signature 195 219 IPR002326 GO:0009055|GO:0020037
Rops5g01734 328 PRINTS Cytochrome C1 signature 244 263 IPR002326 GO:0009055|GO:0020037
Rops5g01734 328 PRINTS Cytochrome C1 signature 162 182 IPR002326 GO:0009055|GO:0020037
Rops5g01734 328 PRINTS Cytochrome C1 signature 283 298 IPR002326 GO:0009055|GO:0020037
Rops5g01734 328 PRINTS Cytochrome C1 signature 97 116 IPR002326 GO:0009055|GO:0020037
Rops5g01734 328 PRINTS Cytochrome C1 signature 233 244 IPR002326 GO:0009055|GO:0020037
Rops5g01734 328 Gene3D - 88 283 IPR036909 GO:0009055|GO:0020037
Rops5g01734 328 FunFam Cytochrome c1, heme protein, mitochondrial 284 328 - -
Rops5g01734 328 ProSiteProfiles Cytochrome c family profile. 111 218 IPR009056 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01734 Rops-Chr5 36001893 36012729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01734 23 328 Chloroplast and Mitochondria Gene Families AT3G27240 84.967 0.0 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01734 K00413 - gmx:100803087 568.54